Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06278 and RBAM_038060

See Amino acid alignment / Visit BSNT_06278 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:43
# Commandline: needle
#    -asequence dna-align/BSNT_06278___yyaC.1.9828.seq
#    -bsequence dna-align/RBAM_038060___yyaC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06278___yyaC-RBAM_038060___yyaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06278___yyaC-RBAM_038060___yyaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06278___yyaC
# 2: RBAM_038060___yyaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 626
# Identity:     471/626 (75.2%)
# Similarity:   471/626 (75.2%)
# Gaps:          19/626 ( 3.0%)
# Score: 1716.0
# 
#
#=======================================

BSNT_06278___      1 ATGAATCGAAAAGGCGGGCTTTTTTCCTCTCAGGAACGAGTAAAGCAATA     50
                     ||||||||||||||||||||||||   |||||.|||||.|.|||.|||||
RBAM_038060__      1 ATGAATCGAAAAGGCGGGCTTTTT---TCTCAAGAACGGGCAAAACAATA     47

BSNT_06278___     51 TGTTTCACATACAGATGCTGCAGCGGCAAAACAAATCCAAACCATCCTTT    100
                     |||.||.|||||.|||.||.|.||.||.||.|||||.|||.|.||||||.
RBAM_038060__     48 TGTATCTCATACGGATTCTTCTGCTGCGAATCAAATACAAGCGATCCTTA     97

BSNT_06278___    101 CTTCATCCTTACGTAAAGCTGCCGGCAAACCAATTGTCGTGGTTTGTATC    150
                     |||||||.|||||||||||.|||||||.|||..|.|||...||.||||||
RBAM_038060__     98 CTTCATCTTTACGTAAAGCAGCCGGCAGACCGTTAGTCACCGTGTGTATC    147

BSNT_06278___    151 GGAACAGACCGTTCAACCGGTGACTCATTAGGCCCGCTCGTAGGGATGAA    200
                     ||.|||||.||.||.|||||.||.||||||||.||||||||| |||..||
RBAM_038060__    148 GGCACAGATCGGTCGACCGGAGATTCATTAGGTCCGCTCGTA-GGAACAA    196

BSNT_06278___    201 ACTCA-AACAGATGCAGCTCACCAGATTCCATGTCTACGGAACCTTATCT    249
                     |.|.| ||.|.|||.|..|...||||||.||.||.|||||.||..|.||.
RBAM_038060__    197 AGTTAGAAAAAATGAATTTAGGCAGATTGCACGTTTACGGCACGCTGTCA    246

BSNT_06278___    250 GACCCCGTCCATGCTGTGAACATGAAGGATAAAATCAATGACATTCATAA    299
                     ||.||.||.||.||.||.||.|||||.||.||..|.||.||.||||| |.
RBAM_038060__    247 GATCCTGTTCACGCCGTCAATATGAAAGACAAGCTGAAAGATATTCA-AC    295

BSNT_06278___    300 AT-TACATAAAAACCCATTTGTTATAGCGGTGGATGCATGCTTAGGCCGC    348
                     || ||||||||||.||.|||.||||||||||.|||||.||.|||||||||
RBAM_038060__    296 ATCTACATAAAAATCCGTTTATTATAGCGGTTGATGCTTGTTTAGGCCGC    345

BSNT_06278___    349 GTTAAGAGTGTGGGTTCATTTCAAATCGGGGACGGGCCATTAAAGCCCGG    398
                     ||.||.||.||.||.||||||||||||||.||.|||||..|.||||||||
RBAM_038060__    346 GTCAAAAGCGTAGGGTCATTTCAAATCGGCGATGGGCCGCTGAAGCCCGG    395

BSNT_06278___    399 AGCCGGTGTGCAAAAAGACCTTCCTGAAGTGGGAGATCTTCATATTAACG    448
                     |||.|||||.||||||||.|||||||||.|.||.||..|.|||||.||.|
RBAM_038060__    396 AGCAGGTGTTCAAAAAGATCTTCCTGAAATCGGTGACGTCCATATCAATG    445

BSNT_06278___    449 GAATCGTAAATGTCAGCGGTTTTATGGAATATTTTGTATTACAAAATACT    498
                     |||||||.|||||||||||.||||||||.||||||||..|.||.|||||.
RBAM_038060__    446 GAATCGTCAATGTCAGCGGGTTTATGGAGTATTTTGTCCTGCAGAATACG    495

BSNT_06278___    499 AGAC-TCAACTTGGTCATGAATATGGCAAATGTTCTAGCGGAAGGTTTGA    547
                     ||.| |||.||| ||.||||..||||||||||||.||||.||.||     
RBAM_038060__    496 AGGCTTCATCTT-GTTATGAGCATGGCAAATGTTTTAGCAGAGGG-----    539

BSNT_06278___    548 GTT-----TAACAGATCGGACAGAGTGGAGGCAAGAACGCCTTAACCCGC    592
                     |||     |.||||||....||||..|..||||.|||||.||.|..|||.
RBAM_038060__    540 GTTACAGCTGACAGATAAATCAGAAGGCCGGCAGGAACGGCTCAGTCCGT    589

BSNT_06278___    593 TGCAAAGGCTCACTGGGCGCATATAA    618
                     |.||.|.|.|.||..|.||.||||||
RBAM_038060__    590 TTCATAAGTTGACAAGACGTATATAA    615


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