Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06292 and RBAM_038150
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:44
# Commandline: needle
# -asequence dna-align/BSNT_06292___rnpA.1.9828.seq
# -bsequence dna-align/RBAM_038150___rnpA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06292___rnpA-RBAM_038150___rnpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06292___rnpA-RBAM_038150___rnpA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06292___rnpA
# 2: RBAM_038150___rnpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 354
# Identity: 282/354 (79.7%)
# Similarity: 282/354 (79.7%)
# Gaps: 6/354 ( 1.7%)
# Score: 1105.0
#
#
#=======================================
BSNT_06292___ 1 TTGAAGAAGCGAAATCGTTTAAAGAAAAATGAAGATTTTCAAAAAGTGTT 50
.||||||||||||||||.||||||||||||||||||||||||||||||||
RBAM_038150__ 1 GTGAAGAAGCGAAATCGGTTAAAGAAAAATGAAGATTTTCAAAAAGTGTT 50
BSNT_06292___ 51 TAAACATGGGACATCAGTTGCAAACCGCCAGTTTGTCTTATATACGCTTG 100
|||||..||.||.||..|.||||||||||||||.||..|.||||||||||
RBAM_038150__ 51 TAAACGCGGAACGTCTATGGCAAACCGCCAGTTCGTGCTGTATACGCTTG 100
BSNT_06292___ 101 ATCAGCCTGAAA-ATGATGAACTGCGTGTCGGGCTTTCCGTCAGCAAAAA 149
||||||| |||| |.||.||.||.||.||.||||||||.|||||.|||||
RBAM_038150__ 101 ATCAGCC-GAAACAGGAAGAGCTCCGGGTAGGGCTTTCTGTCAGTAAAAA 149
BSNT_06292___ 150 AATTGGCAATGCTGTGATGCGAAATCGGATCAAACGTTTGATTCGGCAGG 199
|||.||||||||.||..||||.||||||.|.||.||.||.||..|.||||
RBAM_038150__ 150 AATCGGCAATGCCGTCGTGCGCAATCGGGTGAAGCGGTTAATCAGACAGG 199
BSNT_06292___ 200 CCTTTCTTGAAGAGAAAGAGAGACTGAAG--GAAAAGGATTACATCATTA 247
|..|||..||.||.||||||...||.||| |||| ||||..||.||||
RBAM_038150__ 200 CTGTTCAGGAGGAAAAAGAGCTGCTCAAGCCGAAA--GATTTTATTATTA 247
BSNT_06292___ 248 TTGCCAGAAAACCGGCGAGCCAGCTGACATTTGAGGAAACGAAAAAAAGT 297
|.||.||||||||.||..||.|.||.|..|||||.|||||||||||.|||
RBAM_038150__ 248 TCGCAAGAAAACCCGCCGGCGACCTCAGTTTTGAAGAAACGAAAAAGAGT 297
BSNT_06292___ 298 TTGCAGCATCTATTCAGAAAGTCTTCATTATATAAGAAATCTTCGTCAAA 347
.|||||||..||||||||||..|.||||||||||||||||||||||||||
RBAM_038150__ 298 CTGCAGCACTTATTCAGAAAAACCTCATTATATAAGAAATCTTCGTCAAA 347
BSNT_06292___ 348 GTAG 351
.|||
RBAM_038150__ 348 ATAG 351
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