Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_00788 and BL02198

See DNA alignment / Visit BSNT_00788 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:25
# Commandline: needle
#    -asequence pep-align/BSNT_00788___ydbS.1.5803.seq
#    -bsequence pep-align/BL02198___ydbS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00788___ydbS-BL02198___ydbS.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00788___ydbS-BL02198___ydbS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00788___ydbS
# 2: BL02198___ydbS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 159
# Identity:     108/159 (67.9%)
# Similarity:   127/159 (79.9%)
# Gaps:           0/159 ( 0.0%)
# Score: 561.0
# 
#
#=======================================

BSNT_00788___      1 MREQPKNQISPDGLKVWRLQEIIISAVCLLIVIAVAVLSYYFHWPYWISG     50
                     ||.:||||||.||:||||:...|.|.|.:|....:......|.||.||..
BL02198___ydb      1 MRSEPKNQISRDGVKVWRITACITSFVLMLAAAGLIAAGVIFKWPVWIGI     50

BSNT_00788___     51 VLGAVWLLGSIVTVFIIPKVRHKVWRYEVHEHEIDIQSGIFVVTRVIVPM    100
                     :..||||..|.|.:.:||.:||:||||||||:|||||.||||||||||||
BL02198___ydb     51 LSAAVWLGISFVIIIMIPNIRHRVWRYEVHENEIDIQHGIFVVTRVIVPM    100

BSNT_00788___    101 VRVQHVDTSQGPLLKKYNLATVKISTAATVHSIPALEMEEADRLRDSISR    150
                     ||||||||||||:|:|||||:|:||||||.||||||::||||:|||||||
BL02198___ydb    101 VRVQHVDTSQGPILRKYNLASVQISTAATTHSIPALDVEEADQLRDSISR    150

BSNT_00788___    151 LARVTDDDV    159
                     |||||:|||
BL02198___ydb    151 LARVTEDDV    159


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.