Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05468 and BL02475
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:36
# Commandline: needle
# -asequence pep-align/BSNT_05468___ywtD.1.5803.seq
# -bsequence pep-align/BL02475___pgdS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05468___ywtD-BL02475___pgdS.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05468___ywtD-BL02475___pgdS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05468___ywtD
# 2: BL02475___pgdS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 454
# Identity: 237/454 (52.2%)
# Similarity: 307/454 (67.6%)
# Gaps: 41/454 ( 9.0%)
# Score: 1285.0
#
#
#=======================================
BSNT_05468___ 1 MRHSLFICPAYSFCKNIKKSLNIFKKIPMLKLQKEEEIIKVNTLANWKKF 50
.:...||.|..
BL02475___pgd 1 ---------------------------------------MIKKAANKKLV 11
BSNT_05468___ 51 LLVAVIICFLVPIMTKAEIAEADTSSELIVSEAKNLLGYQYKYGGETPKE 100
|...:.:.::...:|......|||..|.|...|:.|.|.:|.||||.||.
BL02475___pgd 12 LFCGIAVLWMSLFLTNHNDVRADTIGEKIAETARQLEGAKYSYGGEKPKT 61
BSNT_05468___ 101 GFDPSGLIQYVFSKADIHLPRSVNDQYKIGTAVKPENLKPGDILFFKKEG 150
|||.||.:||||...||.|||:|.:|..:|::|..:.|:.||::|||...
BL02475___pgd 62 GFDSSGFVQYVFQSLDITLPRTVKEQSTLGSSVGRQQLEKGDLVFFKNAE 111
BSNT_05468___ 151 SNGSVPTHDALYIGDGQMVHSTQSKGVIITNYKKSSYWSGTYIGARRIAA 200
.....|||.|:|:|:.|::|||:|.||::|..:.|||||..|..|:||..
BL02475___pgd 112 LESDGPTHVAIYLGNDQIIHSTKSNGVVVTKLEGSSYWSSGYFKAKRITK 161
BSNT_05468___ 201 DPATADVPVVQEAEKYIGVPYVFGGSTPSEGFDCSGLVQYVFQQALGIYL 250
:|..:..||||:|:.|:||||||||::|..|||||||.||||::.||:||
BL02475___pgd 162 EPEISMDPVVQKAKSYVGVPYVFGGNSPDLGFDCSGLTQYVFREVLGVYL 211
BSNT_05468___ 251 PRSAEQQWAVGEKIAPQNIKPGDVVYFSNTYKTGISHAGIYAGAGRFIQA 300
|||||||||||:|:..::|:||||::||||||.||||.|||||.||||.|
BL02475___pgd 212 PRSAEQQWAVGQKVKLEDIRPGDVLFFSNTYKPGISHNGIYAGGGRFIHA 261
BSNT_05468___ 301 SRSEKVTISYLSEDYWKSKMTGIRRFDNLTIPKENPIVSEATLYVGEVPY 350
|||.||||||||..||:.|.||:|||||:::|| |||||||..::|||.|
BL02475___pgd 262 SRSNKVTISYLSASYWQKKFTGVRRFDNMSLPK-NPIVSEAIRHIGEVGY 310
BSNT_05468___ 351 KQGGVTPETGFDTAGFVQYVYQKAAGISLPRYATSQYNAGTKIKKADLKP 400
::||.:|:.|||||||:||||:.|||:.|||||..||:.|.||.|.:|:|
BL02475___pgd 311 QKGGTSPKEGFDTAGFIQYVYKTAAGVELPRYADKQYSTGKKITKQELEP 360
BSNT_05468___ 401 GDIVFFQSTS-LNPSIYIGNGQVVHVTLSNGVTITNMNTSTYWKDKYAGS 449
||||||:.|: :||:|||||||||.||||.|||..:|.||.|||||||||
BL02475___pgd 361 GDIVFFKGTTVMNPAIYIGNGQVVLVTLSAGVTTADMETSAYWKDKYAGS 410
BSNT_05468___ 450 IRVQ 453
:|::
BL02475___pgd 411 VRIE 414
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