Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00208 and BL02798

See DNA alignment / Visit BSNT_00208 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:52
# Commandline: needle
#    -asequence pep-align/BSNT_00208___rpoB.1.5803.seq
#    -bsequence pep-align/BL02798___rpoB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00208___rpoB-BL02798___rpoB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00208___rpoB-BL02798___rpoB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00208___rpoB
# 2: BL02798___rpoB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1193
# Identity:    1101/1193 (92.3%)
# Similarity:  1127/1193 (94.5%)
# Gaps:          47/1193 ( 3.9%)
# Score: 5693.0
# 
#
#=======================================

BSNT_00208___      1 -----------------------------------------------MFQ      3
                                                                    |||
BL02798___rpo      1 MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEGLREMFQ     50

BSNT_00208___      4 DISPIEDFTGNLSLEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLIN     53
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BL02798___rpo     51 DISPIEDFTGNLSLEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLIN    100

BSNT_00208___     54 KETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKV    103
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BL02798___rpo    101 KETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKV    150

BSNT_00208___    104 DKNGKKGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALG    153
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BL02798___rpo    151 DKNGKKGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALG    200

BSNT_00208___    154 FGSDQEILDLIGENEYLRNTLDKDNTENSDKALLEIYERLRPGEPPTVEN    203
                     |||||||:||||||||||||||||||||:|||||||||||||||||||||
BL02798___rpo    201 FGSDQEIIDLIGENEYLRNTLDKDNTENTDKALLEIYERLRPGEPPTVEN    250

BSNT_00208___    204 AKSLLDSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPETG    253
                     ||||||||||||||||||:|||||||||||||||||||||||||||||||
BL02798___rpo    251 AKSLLDSRFFDPKRYDLASVGRYKINKKLHIKNRLFNQRLAETLVDPETG    300

BSNT_00208___    254 EILAEKGQILDRRTLDKVLPYLENGIGFRKLYPNGGVVEDEVTLQSIKIF    303
                     |||||||.||||||||||||||||||||:||||||||||||||||||||:
BL02798___rpo    301 EILAEKGAILDRRTLDKVLPYLENGIGFKKLYPNGGVVEDEVTLQSIKIY    350

BSNT_00208___    304 APTDQEGEQVINVIGNAYIEEEIKNITPADIISSISYFFNLLHGVGDTDD    353
                     |||||||||.|||||||||||.:|||||:|||:|||||||||||||||||
BL02798___rpo    351 APTDQEGEQTINVIGNAYIEEGVKNITPSDIIASISYFFNLLHGVGDTDD    400

BSNT_00208___    354 IDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLIN    403
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BL02798___rpo    401 IDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLIN    450

BSNT_00208___    404 IRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAG    453
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BL02798___rpo    451 IRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAG    500

BSNT_00208___    454 MEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNRFGFIETPYRRV    503
                     |||||||||||||||||||||||||||||||||:||||||||||||||||
BL02798___rpo    501 MEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGFIETPYRRV    550

BSNT_00208___    504 DPETGKVTGRIDYLTADEEDNYVVAQANARLDDEGAFIDDSIVARFRGEN    553
                     ||||||||.||||||||||||||||||||||:|:|:|:||||||||||||
BL02798___rpo    551 DPETGKVTPRIDYLTADEEDNYVVAQANARLNDDGSFVDDSIVARFRGEN    600

BSNT_00208___    554 TVVSRNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPL    603
                     |||.::||||||||||||||||||||||||||||||||||||||||||||
BL02798___rpo    601 TVVPKDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPL    650

BSNT_00208___    604 MQPEAPFVGTGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEVDG    653
                     ||||:|.|||||||||.|||||||||:||||||||||||:||||||||||
BL02798___rpo    651 MQPESPIVGTGMEYVSAKDSGAAVICRHPGIVERVEAKNIWVRRYEEVDG    700

BSNT_00208___    654 QKVKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMEL    703
                     ||||||||||||||||||||||||||||||||||||.||||||||||||.
BL02798___rpo    701 QKVKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGDEVEKGEILADGPSMEK    750

BSNT_00208___    704 GELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESEAR    753
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BL02798___rpo    751 GELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESEAR    800

BSNT_00208___    754 DTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVKDGDLLVGKVTPKG    803
                     |||||||||||||||||||||||||:|||||:||||||||||||||||||
BL02798___rpo    801 DTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDLLVGKVTPKG    850

BSNT_00208___    804 VTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGDE    853
                     |||||||||||||||||||||||||||||||||||||.||||||||||||
BL02798___rpo    851 VTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNREDGDE    900

BSNT_00208___    854 LPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDG    903
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BL02798___rpo    901 LPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDG    950

BSNT_00208___    904 TPIDIMLNPLGVPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREEDV    953
                     |||||||||||||||||||||||||:|||||.||:|:|||||||||||||
BL02798___rpo    951 TPIDIMLNPLGVPSRMNIGQVLELHLGMAARRLGLHVASPVFDGAREEDV   1000

BSNT_00208___    954 WETLEEAGMSRDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHA   1003
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BL02798___rpo   1001 WETLEEAGMSRDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHA   1050

BSNT_00208___   1004 RSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKS   1053
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BL02798___rpo   1051 RSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKS   1100

BSNT_00208___   1054 DDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVKILSGDEE   1103
                     ||||||||||||||||||||||||||||||||||||||||||||||.|||
BL02798___rpo   1101 DDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVKILSSDEE   1150

BSNT_00208___   1104 EIEMRDLEDEEDAKQADGLALSGDEEPEETASADVERDVVTKE   1146
                     |||||||||:|||||.:||:|..|||.||..|||.||||||||
BL02798___rpo   1151 EIEMRDLEDDEDAKQNEGLSLPNDEESEELVSADAERDVVTKE   1193


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