Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_00231 and BPUM_0113

See DNA alignment / Visit BSNT_00231 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:11
# Commandline: needle
#    -asequence pep-align/BSNT_00231___rplX.1.24716.seq
#    -bsequence pep-align/BPUM_0113___rplX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00231___rplX-BPUM_0113___rplX.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00231___rplX-BPUM_0113___rplX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00231___rplX
# 2: BPUM_0113___rplX
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 103
# Identity:      97/103 (94.2%)
# Similarity:   100/103 (97.1%)
# Gaps:           0/103 ( 0.0%)
# Score: 503.0
# 
#
#=======================================

BSNT_00231___      1 MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQA     50
                     |||||||||:|||||||||||.|||||||.|||||||:|:||||||||||
BPUM_0113___r      1 MHVKKGDKVVVISGKDKGKQGVILAAFPKNDRVLVEGINLVKKHSKPTQA     50

BSNT_00231___     51 NPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQV    100
                     |||||||.||||||||||||||||||||||||||||||||||||||||||
BPUM_0113___r     51 NPQGGISEQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQV    100

BSNT_00231___    101 LDK    103
                     |||
BPUM_0113___r    101 LDK    103


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.