Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00502 and BPUM_0257
See
DNA alignment /
Visit
BSNT_00502 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:19
# Commandline: needle
# -asequence pep-align/BSNT_00502___ycdF.1.24716.seq
# -bsequence pep-align/BPUM_0257___ycdF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00502___ycdF-BPUM_0257___ycdF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00502___ycdF-BPUM_0257___ycdF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00502___ycdF
# 2: BPUM_0257___ycdF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 259
# Identity: 190/259 (73.4%)
# Similarity: 234/259 (90.3%)
# Gaps: 1/259 ( 0.4%)
# Score: 1016.0
#
#
#=======================================
BSNT_00502___ 1 MYKDLTGKTAIVTGSSKGIGKAIAERFGQEKMNVVVNYHSDPSGADETLE 50
||:||.||||||||||||||:|||.|||||:|||||||..|..||:||::
BPUM_0257___y 1 MYQDLKGKTAIVTGSSKGIGQAIALRFGQEQMNVVVNYKGDEEGAEETVQ 50
BSNT_00502___ 51 IIKQNGGKAVAVEADVSKEEGIQALLDTALEHFGTLDVMVNNSGFNGDEA 100
.|:||||:||.|.||||||:||||::|||||||||:||.||||||||:||
BPUM_0257___y 51 AIQQNGGRAVKVHADVSKEDGIQAIMDTALEHFGTVDVFVNNSGFNGEEA 100
BSNT_00502___ 101 MPHEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQ 150
|||||:||.||:|||||:||.|||||||:.:|::::|||::||||||||:
BPUM_0257___y 101 MPHEMTLEQWQKVIDVNITGAFLGAKAAIAYMIEHDIKGSILNISSVHQE 150
BSNT_00502___ 151 IPRPVNVQYSTSKGGIKMMTETLALNYADKEIRVNAIAPGTIATESNVDT 200
||||.||.|||||||:.|||:||||:||:..||:|||||||:|||||.|.
BPUM_0257___y 151 IPRPFNVHYSTSKGGMNMMTKTLALDYAEAGIRINAIAPGTMATESNDDL 200
BSNT_00502___ 201 KKEESRQKQLKKIPMQAFGKPEEVAAAAAWLVSEEASYVTGTTLFVDGGM 250
:.|:.:||||:||||:|||:|:|:.:|||:|||:||||:|||||||||||
BPUM_0257___y 201 QDEQKKQKQLEKIPMRAFGEPKEIGSAAAFLVSKEASYITGTTLFVDGGM 250
BSNT_00502___ 251 TLYPSQLE- 258
||||||:.
BPUM_0257___y 251 TLYPSQIND 259
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.