Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00563 and BPUM_0295

See DNA alignment / Visit BSNT_00563 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:22
# Commandline: needle
#    -asequence pep-align/BSNT_00563___ycgK.1.24716.seq
#    -bsequence pep-align/BPUM_0295___ycgK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00563___ycgK-BPUM_0295___ycgK.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00563___ycgK-BPUM_0295___ycgK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00563___ycgK
# 2: BPUM_0295___ycgK
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 328
# Identity:     156/328 (47.6%)
# Similarity:   219/328 (66.8%)
# Gaps:          25/328 ( 7.6%)
# Score: 796.5
# 
#
#=======================================

BSNT_00563___      1 --MDIKVMEYAVEIARRQSFTKAAEHLHIAQPSLSQQIKKLEAELRLTLF     48
                       :||::|||.:|:.|::|||||||.||||||||||||||||.||...||
BPUM_0295___y      1 MKVDIRMMEYVMEVYRQKSFTKAAEELHIAQPSLSQQIKKLEEELDTPLF     50

BSNT_00563___     49 HRSHGSVTLTPHGRRFIEKAEDIIRSRDDLLREMQERSQGIGHKLSIGIP     98
                     .|.:|.||.||.|.|||::||.|::.:|||||||.|.:..:|.:|:||.|
BPUM_0295___y     51 IRKYGQVTPTPQGSRFIKRAESILKEKDDLLREMGEAAYEVGKELNIGAP    100

BSNT_00563___     99 AVTGRYLFPPLLRQFLARYPHVEVQLVEKDPVSLEEMTAKGEVDLSVLSL    148
                     ||||.|:.|.||:.|...||||.|:|:|:.|..||::...|::||::||:
BPUM_0295___y    101 AVTGGYVLPSLLKTFCQTYPHVHVRLIEESPRELEKLLLAGQLDLAILSM    150

BSNT_00563___    149 PIEDERLSITPLLTEPIVLAVPKEKQRWMPPELVALIEKALEGKEGRQPC    198
                     |:|.|.|....:||||::||||...|.|:..||..:|.     :..::..
BPUM_0295___y    151 PVEHESLKTKHMLTEPLLLAVPPSAQPWLQAELNDIIH-----QRDQKGT    195

BSNT_00563___    199 VPLDMVRNVPFILLKEGFGFRRTVLDLCAESGFKPNAAFKTSHIETAQSL    248
                     ||..::.:..||:||||:|||:.|.:||...||:|...|:||||:|||:|
BPUM_0295___y    196 VPFRLLEDASFIMLKEGYGFRQVVTELCHHHGFQPKITFETSHIQTAQAL    245

BSNT_00563___    249 VANGLGVTMAPNMVRRDKDPGVIYLSIQSAPSRTLVFVFLKNRYVSLTAQ    298
                     |.||||||:.|.||.:::...|.||.|.|:|:|||||.:::.||::..||
BPUM_0295___y    246 VKNGLGVTVVPKMVAQEERNEVTYLKIDSSPTRTLVFAYVEERYLTKAAQ    295

BSNT_00563___    299 AFMEL--TRESLKQTFDEGCLGNKDENI    324
                     |.|:|  .:|:.                
BPUM_0295___y    296 ALMDLYQNQENT----------------    307


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