Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00840 and BPUM_0555

See DNA alignment / Visit BSNT_00840 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:35
# Commandline: needle
#    -asequence pep-align/BSNT_00840___ydcR.1.24716.seq
#    -bsequence pep-align/BPUM_0555___ydcR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00840___ydcR-BPUM_0555___ydcR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00840___ydcR-BPUM_0555___ydcR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00840___ydcR
# 2: BPUM_0555___ydcR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 369
# Identity:     217/369 (58.8%)
# Similarity:   278/369 (75.3%)
# Gaps:          20/369 ( 5.4%)
# Score: 1171.0
# 
#
#=======================================

BSNT_00840___      1 MDELKHPPHANRGVVIVKEENETVESPLVSMVDYIRVSFKTHDVDRIIEE     50
                     |.....||||||||:..|||.   :|.|.|||||:|:||||||:|.||:.
BPUM_0555___y      1 MTGKVKPPHANRGVLRKKEEE---KSQLTSMVDYVRISFKTHDIDHIIQN     47

BSNT_00840___     51 VLHLSKDFMTEKQSGFYGYVGTYELDYVKVFYSAPDDNRGVLIEMSGQGC    100
                     |||::::||||:..|||||:||:.:|.:|||||||||.||.|||:||:||
BPUM_0555___y     48 VLHINREFMTEEPRGFYGYIGTWRMDMIKVFYSAPDDERGTLIELSGKGC     97

BSNT_00840___    101 RQFESFLECRKKTWYDFFQDCMQQGGSFTRFDLAIDDKKTYFSIPELLKK    150
                     ||||||||||.|||:||||||:.:.|:|||.|:||||||||||||.|||:
BPUM_0555___y     98 RQFESFLECRGKTWFDFFQDCLNEKGNFTRLDIAIDDKKTYFSIPNLLKR    147

BSNT_00840___    151 AQKGECISRFRKSDFNGSLGLSDGITGGTTIYFGSKKSEAYLCFYEKNYE    200
                     .|||.|:||:|:.|.|||..:.||.:.||||||||||||:||||||||||
BPUM_0555___y    148 VQKGLCVSRYRRVDNNGSNQIEDGSSAGTTIYFGSKKSESYLCFYEKNYE    197

BSNT_00840___    201 QAEKYNIPLEELGDWNRYELRLKNERAQVAIDALLKTKDLTLIAMQIINN    250
                     ||:|:|:..::|..|||||:|||:|||..|:.||:..::|..||:.||:|
BPUM_0555___y    198 QADKFNLSYDDLEKWNRYEIRLKSERAHSAVCALIADRNLKKIAIGIISN    247

BSNT_00840___    251 YVRFVDADENITREHWKTSLFWSEFIGDVGKLPLYVKPQKDFYQKSRNWL    300
                     .:|||:......:...|||.||.:|||||.||.|.::|:||||:||||||
BPUM_0555___y    248 CIRFVEEKGEGDKRKRKTSPFWLKFIGDVEKLQLTIEPKKDFYEKSRNWL    297

BSNT_00840___    301 RNSCAPTMKMVLEADQ-----------------HLGKTDLSDMIAEAELA    333
                     :||||||||::||.|:                 .||.:||.:||..|:|.
BPUM_0555___y    298 QNSCAPTMKVILEVDRVLGNSRLLDVILNAEEGALGDSDLLNMIFNAKLQ    347

BSNT_00840___    334 EKHEKMLNVFIADVADMVV    352
                     :||||||..|:..:.:|||
BPUM_0555___y    348 DKHEKMLETFLTPIHEMVV    366


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