Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00506 and BPUM_2708

See DNA alignment / Visit BSNT_00506 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:19
# Commandline: needle
#    -asequence pep-align/BSNT_00506___ycdH.1.24716.seq
#    -bsequence pep-align/BPUM_2708.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00506___ycdH-BPUM_2708.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00506___ycdH-BPUM_2708.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00506___ycdH
# 2: BPUM_2708
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 335
# Identity:     120/335 (35.8%)
# Similarity:   186/335 (55.5%)
# Gaps:          22/335 ( 6.6%)
# Score: 565.5
# 
#
#=======================================

BSNT_00506___      1 MFKKWSGLFVIAACFLLVAAC----GNSSTKGSADSKGDKLHVVTTFYPM     46
                      .||...:.::|...:.:|||    |.:::||.||.   ||.|.||.:|:
BPUM_2708          1 -MKKIFYMLIVALFAIGLAACSSSAGTNASKGKADG---KLTVYTTIFPI     46

BSNT_00506___     47 YEFTKQIVKDKGDVDLLIPSSVEPHDWEPTPKDIANIQDADLFVYNSEYM     96
                     .:||::|.........:.|::.:.|.:||:.|.:..:.:.|.|:|:....
BPUM_2708         47 QDFTEKIGGSHVHAQSVYPANADAHSFEPSSKTMVEMAEGDAFIYSGTGA     96

BSNT_00506___     97 ETWVPSAEKSMGQGHAVFVNASKGIDLM----EGSEEEHEEHDHG----E    138
                     |.:......::.......|.|::||.|:    |.|.||.|:|||.    |
BPUM_2708         97 EAFADKTASTLKDQGVKTVKAAEGIKLLSTKEEHSHEEEEDHDHDHEGEE    146

BSNT_00506___    139 HE---HSHA-MDPHVWLSPVLAQKEVKNITAQIVKQDPDNKEYYEKNSKE    184
                     |:   |.|. .|||.||.||.||:..|||...:|..|||:|:.|.||.::
BPUM_2708        147 HDHDGHDHGDKDPHAWLDPVYAQQMAKNIKDTLVSLDPDHKDEYTKNYEK    196

BSNT_00506___    185 YIAKLQDLDKLYRTTAKKAEKKEFITQHTAFGYLAKEYGLKQVPIAGLSP    234
                     ....||.||:.:.||..||:.||.:..|.|:||..|.||::|:.:.|||.
BPUM_2708        197 LKKDLQSLDQEFNTTLSKAKHKEILVSHAAYGYWEKRYGIEQISVLGLSA    246

BSNT_00506___    235 DQEPSAASLAKLKTYAKEHNVKVIYFEEIASSKVADTLASEIGAKTEVLN    284
                     .:|||...|..:...|::|:::.:.||...||||:||:.||||||:..|.
BPUM_2708        247 SEEPSQKQLESIVQKAEKHHIQYVIFENNVSSKVSDTIRSEIGAKSLTLK    296

BSNT_00506___    285 TLEGLSKEEQDKGLGYIDIMKQNLDALKDSLLVKS    319
                     .||.:::::...|..|:.:|||||..||.:|..  
BPUM_2708        297 NLESITEDDAKNGESYVSLMKQNLKTLKTALND--    329


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