Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_01010 and BPUM_3005

See DNA alignment / Visit BSNT_01010 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:40
# Commandline: needle
#    -asequence pep-align/BSNT_01010___ydhR.1.24716.seq
#    -bsequence pep-align/BPUM_3005.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01010___ydhR-BPUM_3005.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01010___ydhR-BPUM_3005.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01010___ydhR
# 2: BPUM_3005
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 301
# Identity:     153/301 (50.8%)
# Similarity:   204/301 (67.8%)
# Gaps:          14/301 ( 4.7%)
# Score: 827.5
# 
#
#=======================================

BSNT_01010___      1 --MLGGIEAGGTKVICAVGKEDGTIIDRIEFPTKMPDETIEKVIQYFRQF     48
                       ..|.|||||||..||:|.|.|.|:..:..||:.|::|::|:|.:|.|.
BPUM_3005          1 MAYYGAIEAGGTKFCCAIGNEHGDILKEMTIPTEHPEKTLQKLIPFFEQH     50

BSNT_01010___     49 SLQAIGIGSFGPVDNDKTSQTYGTIMATPKAGWRHYPFLQTVKNEMKIPV     98
                     .::|:|:|||||:...|...:||.||.|||..|:||||:..::.::|:||
BPUM_3005         51 DIEALGVGSFGPICVQKDDPSYGYIMNTPKVEWKHYPFIPELEKQLKVPV    100

BSNT_01010___     99 GFSTDVNAAALGEFLFGEAKGLDSCLYITIGTGIGAGAIVGGRLLQGLSH    148
                     .|:||||||||||...|.||||:||:|||:||||||||:|...||.|.||
BPUM_3005        101 SFTTDVNAAALGELTKGAAKGLNSCMYITVGTGIGAGAVVKNELLHGHSH    150

BSNT_01010___    149 PEMGHIYIRRHPDDAYQGKCPYHGDCFEGLASGPAIEARWGKKAADLSGI    198
                     ||||||.:|:|..|.::|.||.||.|.||||:|||||.||||.|.:|:..
BPUM_3005        151 PEMGHILVRQHESDVFEGVCPAHGTCLEGLAAGPAIEKRWGKSAKELTEE    200

BSNT_01010___    199 AQVWELEGYYIAQALAQYILILAPKKIILGGGVMQQKQVFSYIYQYVPKI    248
                     ..||.||..|:||||.||.|||:|::||:|||||:|||:|..|.:.:...
BPUM_3005        201 ESVWALEADYLAQALMQYSLILSPERIIMGGGVMKQKQLFPLIREKLAAY    250

BSNT_01010___    249 MNNYLDFSELSDDISDYIVPPRLGSNAGIIGTLVLAHQALQAEAASGEVR    298
                     :|:|:|...|    ..|||.|.|...||:.|.|:||.:|.:..       
BPUM_3005        251 LNDYVDLPPL----DSYIVSPGLEDKAGMTGALLLAIEAKKNA-------    289

BSNT_01010___    299 S    299
                      
BPUM_3005        289 -    289


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