Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05126 and BPUM_3047

See DNA alignment / Visit BSNT_05126 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:46
# Commandline: needle
#    -asequence pep-align/BSNT_05126___yvbK.1.24716.seq
#    -bsequence pep-align/BPUM_3047___yvbK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05126___yvbK-BPUM_3047___yvbK.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05126___yvbK-BPUM_3047___yvbK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05126___yvbK
# 2: BPUM_3047___yvbK
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 158
# Identity:      85/158 (53.8%)
# Similarity:   107/158 (67.7%)
# Gaps:           9/158 ( 5.7%)
# Score: 407.0
# 
#
#=======================================

BSNT_05126___      1 MQHLTIQ-KATNFDQPL-YELLLLADPSKEIVDDYLVRGECYTGYISGEL     48
                         .|| :..:.|:.| .:||||||||||.|..|:..|.||..:...::
BPUM_3047___y      1 ----MIQIRPLSHDESLPMDLLLLADPSKEKVLTYVQSGSCYAAFHEEDV     46

BSNT_05126___     49 AGVYVIITTRPQTVEIVNIAVKQTMQKQGIGKLLILDAIEKAKHMGAKVI     98
                     .||||:......||||:|:|||::.|.:||||.||..||.:||..|.:.|
BPUM_3047___y     47 IGVYVLTPLSQHTVEIMNVAVKESWQGKGIGKQLIHHAIAEAKVAGFQAI     96

BSNT_05126___     99 EIGTGNSSIHQLSLYQKCGFRLQAIDHDFFIRHYDEEIFENGIQCRDMVR    148
                     |||||||||.||:||||||||:.:|||.||::||||.|:||||||.||||
BPUM_3047___y     97 EIGTGNSSIQQLALYQKCGFRIASIDHGFFLKHYDEPIYENGIQCMDMVR    146

BSNT_05126___    149 LYLDL---    153
                     |.|..   
BPUM_3047___y    147 LSLTFQAD    154


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.