Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05475 and BPUM_3264
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:07
# Commandline: needle
# -asequence pep-align/BSNT_05475___rbsK.1.24716.seq
# -bsequence pep-align/BPUM_3264___rbsK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05475___rbsK-BPUM_3264___rbsK.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05475___rbsK-BPUM_3264___rbsK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05475___rbsK
# 2: BPUM_3264___rbsK
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 293
# Identity: 189/293 (64.5%)
# Similarity: 222/293 (75.8%)
# Gaps: 12/293 ( 4.1%)
# Score: 970.0
#
#
#=======================================
BSNT_05475___ 1 -----------MDLVVTSDKRPKAGETVLGTSFQTVPGGKGANQAVAAAR 39
|||||||:|||.|||||||.||:|||||||||||||:||
BPUM_3264___r 1 MSHIVVVGSCSMDLVVTSNKRPNAGETVLGESFKTVPGGKGANQAVASAR 50
BSNT_05475___ 40 LGAQVFMVGKVGDDHYGTAILNNLKANGVCTDYMEPVTHTESGTAHIVLA 89
|||.|:|:|:||||.||..||:||:..||.|.||:|||..|||||||:||
BPUM_3264___r 51 LGADVYMIGRVGDDTYGQDILSNLQDQGVRTSYMKPVTEMESGTAHIILA 100
BSNT_05475___ 90 EGDNSIVVVKGANDDITPAYALKALEQIEKVDMVLIQQEIPEETVDEVCK 139
|||||||||||||:::||.|..:||..|:.:.|||||||||||||:.||.
BPUM_3264___r 101 EGDNSIVVVKGANNEVTPDYVREALSTIDDIGMVLIQQEIPEETVEAVCA 150
BSNT_05475___ 140 YCHSLDIPIMLNPAPARPLKQETIDHATYLTPNEHESSILFPDLTTSEAL 189
.|...:||::|||||||.:.|:.:|.|||:||||||:.::|...:..:||
BPUM_3264___r 151 ICSKKEIPVILNPAPARKVSQQVLDQATYITPNEHEAVLMFNGRSIEDAL 200
BSNT_05475___ 190 ALYPAKLFITEGKQGVRYSAGSKEVLIPSFPVEPVDTTGAGDTFNAAFAV 239
..||.||.|||||.||||..|.||||:|.||||.|||||||||||.|.||
BPUM_3264___r 201 RQYPNKLLITEGKNGVRYFDGLKEVLVPGFPVEAVDTTGAGDTFNGALAV 250
BSNT_05475___ 240 ALAEGKDIEAALRFANRAASLSVCSFGAQGGMPTRNEVEELLS 282
||.|||.:..||.|||.|||:||..||||||||||.|:|...
BPUM_3264___r 251 ALTEGKSLYDALAFANLAASMSVTKFGAQGGMPTREELERKK- 292
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