Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00004 and RBAM_000040

See DNA alignment / Visit BSNT_00004 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:46
# Commandline: needle
#    -asequence pep-align/BSNT_00004___recF.1.9828.seq
#    -bsequence pep-align/RBAM_000040___recF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00004___recF-RBAM_000040___recF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00004___recF-RBAM_000040___recF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00004___recF
# 2: RBAM_000040___recF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 370
# Identity:     349/370 (94.3%)
# Similarity:   361/370 (97.6%)
# Gaps:           0/370 ( 0.0%)
# Score: 1779.0
# 
#
#=======================================

BSNT_00004___      1 MYIQNLELSSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAK     50
                     ||||||||:|||||:.||||||||||||||||||||||||||||||||||
RBAM_000040__      1 MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAK     50

BSNT_00004___     51 SHRTSNDKELIRWDKDYAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIE    100
                     ||||||||||||||:|||||||||||:||.||||||||||||||||||||
RBAM_000040__     51 SHRTSNDKELIRWDEDYAKIEGRVMKRNGDIPMQLVISKKGKKGKVNHIE    100

BSNT_00004___    101 QQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDL    150
                     |||||||||||||||||||||||||||||||||||||||||||.|||:||
RBAM_000040__    101 QQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDL    150

BSNT_00004___    151 SLYQKILSQRNHFLKQLQTRKQTDRTMLDVLTDQLIEVAAKVVVKRLQFT    200
                     ||||||||||||||||||:||||||||||||||||||.|||||.||||||
RBAM_000040__    151 SLYQKILSQRNHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFT    200

BSNT_00004___    201 AQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLDLSKIGDSYQEAFSK    250
                     |||||||||||:||||||||||||||||||||||.||||||:||||:|||
RBAM_000040__    201 AQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKIGNSYQESFSK    250

BSNT_00004___    251 LREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEI    300
                     |:||||||||||.|||||||||||||||||||||||||||||||||||||
RBAM_000040__    251 LKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEI    300

BSNT_00004___    301 DLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQGRVQTFVTTTSVDGI    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_000040__    301 DLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQGRVQTFVTTTSVDGI    350

BSNT_00004___    351 DHETLRQAGMFRVQNGALVK    370
                     ||:||.|||||||:||.|||
RBAM_000040__    351 DHDTLHQAGMFRVENGTLVK    370


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