Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_00087 and RBAM_000590

See DNA alignment / Visit BSNT_00087 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:51
# Commandline: needle
#    -asequence pep-align/BSNT_00087___gcaD.1.9828.seq
#    -bsequence pep-align/RBAM_000590___gcaD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00087___gcaD-RBAM_000590___gcaD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00087___gcaD-RBAM_000590___gcaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00087___gcaD
# 2: RBAM_000590___gcaD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 456
# Identity:     409/456 (89.7%)
# Similarity:   435/456 (95.4%)
# Gaps:           0/456 ( 0.0%)
# Score: 2126.0
# 
#
#=======================================

BSNT_00087___      1 MDKRFAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDEALKLSLSKLV     50
                     |||||||:||||:||||||||||||||||||||||||.||||||||:|||
RBAM_000590__      1 MDKRFAVILAAGKGTRMKSKLYKVLHPVCGKPMVEHVADEALKLSLAKLV     50

BSNT_00087___     51 TIVGHGAEEVKKQLGDKSEYALQAEQLGTAHAVKQAQPFLADEKGVTIVI    100
                     ||||||||:||||||.||:|||||||||||||||||:|||..||||||||
RBAM_000590__     51 TIVGHGAEDVKKQLGQKSDYALQAEQLGTAHAVKQAKPFLHGEKGVTIVI    100

BSNT_00087___    101 CGDTPLLTAETMEQMLKEHAQREAKATILTAVAEDPTGYGRIIRSENGAV    150
                     |||||||||||||.||.||..:.||||:|||||:||.|||||||||:|||
RBAM_000590__    101 CGDTPLLTAETMEAMLNEHTDKGAKATVLTAVADDPAGYGRIIRSEDGAV    150

BSNT_00087___    151 QKIVEHKDASEEERLVTEINTGTYCFDNEALFRAIDQVSNDNAQGEYYLP    200
                     |||||||||||:||||.||||||||||||||||.|:||||:|||||||||
RBAM_000590__    151 QKIVEHKDASEQERLVKEINTGTYCFDNEALFRVIEQVSNENAQGEYYLP    200

BSNT_00087___    201 DVIEILKNEGETVAAYQTGNFQETLGVNDRVALSQAEQFMKERINKRHMQ    250
                     |||||||:|||||||||||||||||||||||||||||.:|||||||||||
RBAM_000590__    201 DVIEILKDEGETVAAYQTGNFQETLGVNDRVALSQAEMYMKERINKRHMQ    250

BSNT_00087___    251 NGVTLIDPMNTYISPDAVIGSDTVIYPGTVIKGEVQIGEDTIIGPHTEIM    300
                     |||||||||||||||||.||.|||||||||:||:.:||::.:|||||||.
RBAM_000590__    251 NGVTLIDPMNTYISPDARIGQDTVIYPGTVLKGQAEIGDECVIGPHTEIE    300

BSNT_00087___    301 NSAIGSRTVIKQSVVNHSKVGNDVNIGPFAHIRPDSVIGNEVKIGNFVEI    350
                     :|:|||||||||||||.|||||||||||||||||||.|||||||||||||
RBAM_000590__    301 DSSIGSRTVIKQSVVNRSKVGNDVNIGPFAHIRPDSAIGNEVKIGNFVEI    350

BSNT_00087___    351 KKTQFGDRSKASHLSYVGDAEVGTDVNLGCGSITVNYDGKNKYLTKIEDG    400
                     ||||||||||||||||:|||||||||||||||||||||||.|||||||||
RBAM_000590__    351 KKTQFGDRSKASHLSYIGDAEVGTDVNLGCGSITVNYDGKKKYLTKIEDG    400

BSNT_00087___    401 AFIGCNSNLVAPVTVGEGAYVAAGSTVTEDVPGKALAIARARQVNKDDYV    450
                     |||||||||||||||||||||||||||||||||:||||||||||||:|||
RBAM_000590__    401 AFIGCNSNLVAPVTVGEGAYVAAGSTVTEDVPGEALAIARARQVNKEDYV    450

BSNT_00087___    451 KNIHKK    456
                     ||||||
RBAM_000590__    451 KNIHKK    456


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.