Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00304 and RBAM_002070

See DNA alignment / Visit BSNT_00304 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:05
# Commandline: needle
#    -asequence pep-align/BSNT_00304___ybaR.1.9828.seq
#    -bsequence pep-align/RBAM_002070___ybaR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00304___ybaR-RBAM_002070___ybaR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00304___ybaR-RBAM_002070___ybaR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00304___ybaR
# 2: RBAM_002070___ybaR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 478
# Identity:     377/478 (78.9%)
# Similarity:   411/478 (86.0%)
# Gaps:          44/478 ( 9.2%)
# Score: 1896.0
# 
#
#=======================================

BSNT_00304___      1 MNDSFTLKQQWFGNIRKDILAGILVALALIPEAIGFSIIAGVDPMVGLYA     50
                                                                 ||||||
RBAM_002070__      1 --------------------------------------------MVGLYA      6

BSNT_00304___     51 SFCIAIIISIFGGRPGMISAATGSMAVVMVSLVADHGLQYLFAATILTGI    100
                     ||||||||||||||||||||||||||||||:||||:||||||||||||||
RBAM_002070__      7 SFCIAIIISIFGGRPGMISAATGSMAVVMVTLVADYGLQYLFAATILTGI     56

BSNT_00304___    101 IQVILGISKIARLMKFIPRSVMIGFVNALAILIFSAQLPQFEGASWSMYA    150
                     ||.|||:||||:|||||||||||||||||||||||||||||:||||.|||
RBAM_002070__     57 IQFILGVSKIAKLMKFIPRSVMIGFVNALAILIFSAQLPQFKGASWVMYA    106

BSNT_00304___    151 MLAGSLVIIYVLPRFTTAVPSPLVAIIVMTIIAVTFHVDVRTVGDMGNIS    200
                     ||||||.|||:||:.|||||||||||||||||||.||.|||||||||.|:
RBAM_002070__    107 MLAGSLAIIYLLPKVTTAVPSPLVAIIVMTIIAVVFHADVRTVGDMGGIT    156

BSNT_00304___    201 SSLPHFLIPDVPFTFETLQIIFPYSIALAFVGLLESLLTAQIIDEMTDTD    250
                     ||||||||||||:|||||::|||||:||||||||||||||||||||||||
RBAM_002070__    157 SSLPHFLIPDVPWTFETLRVIFPYSLALAFVGLLESLLTAQIIDEMTDTD    206

BSNT_00304___    251 SDKNKESRGQGIANIVTGFFGGMAGCAMIGQSVINTKAGGRGRLSAFVAG    300
                     ||||||||||||||||.||||||||||||||||||||||||||||||.||
RBAM_002070__    207 SDKNKESRGQGIANIVNGFFGGMAGCAMIGQSVINTKAGGRGRLSAFTAG    256

BSNT_00304___    301 AFLMFLIAVLSHVVVKIPMAALVAVMVMVSVGTFDWSSLKGLKKAPLTDS    350
                     |||||||||||.:|||||||||||||||||:|||||||:|||:|||||||
RBAM_002070__    257 AFLMFLIAVLSGIVVKIPMAALVAVMVMVSIGTFDWSSIKGLRKAPLTDS    306

BSNT_00304___    351 IVMVVTVVTVVVTDDLSKGVFVGVLLSAVFFVAKISKLKIVSHAEDQKLR    400
                     ||||:||||||:|:|||||||.||||||:||.||||||||.||:|.:.:|
RBAM_002070__    307 IVMVITVVTVVLTNDLSKGVFAGVLLSAIFFTAKISKLKIESHSEQKDVR    356

BSNT_00304___    401 TYQVKGQIFFASVTDLTNAFIYQEDIERVVIDLTEAHVWDDSGAAALDKI    450
                     ||:|.||||||||::|.||.:|.||::|:|||||:||||||||||||:||
RBAM_002070__    357 TYKVTGQIFFASVSELMNAIVYDEDVKRIVIDLTDAHVWDDSGAAALEKI    406

BSNT_00304___    451 VAKFKEQGIEAELKGLNKASKSLMKQMA    478
                     |||.||.||||||||||:.|:.||||||
RBAM_002070__    407 VAKCKEYGIEAELKGLNQKSRDLMKQMA    434


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