Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00342 and RBAM_002260

See DNA alignment / Visit BSNT_00342 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:07
# Commandline: needle
#    -asequence pep-align/BSNT_00342___sigW.1.9828.seq
#    -bsequence pep-align/RBAM_002260___sigW.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00342___sigW-RBAM_002260___sigW.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00342___sigW-RBAM_002260___sigW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00342___sigW
# 2: RBAM_002260___sigW
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 187
# Identity:     179/187 (95.7%)
# Similarity:   185/187 (98.9%)
# Gaps:           0/187 ( 0.0%)
# Score: 909.0
# 
#
#=======================================

BSNT_00342___      1 MEMMIKKRIKQVKKGDQNAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQ     50
                     ||.:|||||||||||||||||:|||:||||||||||||||||||||||||
RBAM_002260__      1 MENLIKKRIKQVKKGDQNAFAEIVDLYKDKIYQLCYRMLGNVHEAEDIAQ     50

BSNT_00342___     51 EAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAG    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_002260__     51 EAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAG    100

BSNT_00342___    101 TEGLTMYSQIAADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYI    150
                     .||||||||||||||||||||:|||||:|||:||||||||||||||||||
RBAM_002260__    101 AEGLTMYSQIAADGVLPEDAVLSLELSDTIQKKILKLPDKYRTVIVLKYI    150

BSNT_00342___    151 DELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRDL    187
                     |||||||||||||||||||||||||||||||||||||
RBAM_002260__    151 DELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRDL    187


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