Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00474 and RBAM_002980

See DNA alignment / Visit BSNT_00474 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:13
# Commandline: needle
#    -asequence pep-align/BSNT_00474___lmrB.1.9828.seq
#    -bsequence pep-align/RBAM_002980___lmrB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00474___lmrB-RBAM_002980___lmrB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00474___lmrB-RBAM_002980___lmrB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00474___lmrB
# 2: RBAM_002980___lmrB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 478
# Identity:     421/478 (88.1%)
# Similarity:   443/478 (92.7%)
# Gaps:           2/478 ( 0.4%)
# Score: 2134.0
# 
#
#=======================================

BSNT_00474___      1 METTAKASQQYKVMPIMISLLLAGFIGMFSETALNIALTDLMKELNITAA     50
                     || .|:.|:||||||||||||.|||||||||||||||||||||||:||.|
RBAM_002980__      1 ME-NAQPSKQYKVMPIMISLLTAGFIGMFSETALNIALTDLMKELHITPA     49

BSNT_00474___     51 TVQWLTTGYLLVLGILVPVSGLLLQWFTTRQLFTVSLIFSILGTFIAALA    100
                     |||||||||||||||||||||||||||||||||.|||.|||:||.|||||
RBAM_002980__     50 TVQWLTTGYLLVLGILVPVSGLLLQWFTTRQLFIVSLAFSIIGTLIAALA     99

BSNT_00474___    101 PSFSFLLAARIVQALGTGLLLPLMFNTILVIFPPHKRGAAMGTIGLVIMF    150
                     |||.||||||||||||||||||||||||||||||||||||||||||||||
RBAM_002980__    100 PSFPFLLAARIVQALGTGLLLPLMFNTILVIFPPHKRGAAMGTIGLVIMF    149

BSNT_00474___    151 APAIGPTFSGLVLEHLNWHWIFWISLPFLVLALVFGIAYMQNVSETTKPK    200
                     |||||||||||||||||||||||||||||||||:||||||||||:.||||
RBAM_002980__    150 APAIGPTFSGLVLEHLNWHWIFWISLPFLVLALLFGIAYMQNVSDITKPK    199

BSNT_00474___    201 IDVLSIILSTIGFGGIVFGFSNAGEGSGGWSSPTVIVSLIVGVVGLILFS    250
                     |||||||||||||||||||||||||||.||||||||.||.||.:.|||||
RBAM_002980__    200 IDVLSIILSTIGFGGIVFGFSNAGEGSDGWSSPTVIGSLTVGAIALILFS    249

BSNT_00474___    251 IRQLTMKQPMMNLRAFKYPMFILGVIMVFICMMVILSSMLLLPMYLQGGL    300
                     ||||||||||||||||:||||:|||::||||||||||:|||||||||.||
RBAM_002980__    250 IRQLTMKQPMMNLRAFRYPMFVLGVVIVFICMMVILSTMLLLPMYLQSGL    299

BSNT_00474___    301 VLTAFASGLVLLPGGILNGFMSPVTGRLFDKYGPKWLVIPGFVIVTVVLW    350
                     :||||.|||:||||||||||||||||||||||||||||||||||....|.
RBAM_002980__    300 MLTAFTSGLILLPGGILNGFMSPVTGRLFDKYGPKWLVIPGFVITATALS    349

BSNT_00474___    351 FFSNVTTASTAVLIIILHTCLMIGISMIMMPAQTNGLNQLPREFYPDGTA    400
                     ||||:..||||:||:.|||||||||||||||||||||||||.||||||||
RBAM_002980__    350 FFSNINGASTALLIVALHTCLMIGISMIMMPAQTNGLNQLPPEFYPDGTA    399

BSNT_00474___    401 IMNTLQQMAGAIGTAVAVSIMAAGQHDYMSTVKNPADPAVIPQALTAGVQ    450
                     |||||||||||||||||||||||||.:||||||||.||:....||.||||
RBAM_002980__    400 IMNTLQQMAGAIGTAVAVSIMAAGQKNYMSTVKNPNDPSAYSHALIAGVQ    449

BSNT_00474___    451 HAFVFAMIVAIIGLIGAFFMKRVKVDH-    477
                     |||:||||||:||||.|||||||||:| 
RBAM_002980__    450 HAFIFAMIVAVIGLISAFFMKRVKVNHS    477


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