Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00475 and RBAM_002990

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:13
# Commandline: needle
#    -asequence pep-align/BSNT_00475___lmrA.1.9828.seq
#    -bsequence pep-align/RBAM_002990___lmrA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00475___lmrA-RBAM_002990___lmrA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00475___lmrA-RBAM_002990___lmrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00475___lmrA
# 2: RBAM_002990___lmrA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 188
# Identity:     131/188 (69.7%)
# Similarity:   157/188 (83.5%)
# Gaps:           0/188 ( 0.0%)
# Score: 686.0
# 
#
#=======================================

BSNT_00475___      1 MSYGDSREKILSAATRLFQLQGYYGTGLNQIIKESGAPKGSLYYHFPGGK     50
                     |||||||||||:|||||||||||||||||||||||||||||||||||.||
RBAM_002990__      1 MSYGDSREKILAAATRLFQLQGYYGTGLNQIIKESGAPKGSLYYHFPDGK     50

BSNT_00475___     51 EQLAIEAVNEMKEYIRQKIADCMESYTDPAEGIQAFLKELSCQFSCTEDI    100
                     |||||||||||..|||.||.:.::::.||||.|||||::||.||:|.|:.
RBAM_002990__     51 EQLAIEAVNEMSHYIRMKIKESLDAHPDPAESIQAFLQDLSSQFTCPENF    100

BSNT_00475___    101 EGLPVGLLAAETSLKSEPLREACHEAYKEWASVYEEKLRQTGCSESRAKE    150
                     ||.|||||||||:||||.|::||..||:||.:::..|||..|.|:.:|.|
RBAM_002990__    101 EGFPVGLLAAETALKSEKLQQACQSAYQEWENLFAGKLRSAGFSDEKAAE    150

BSNT_00475___    151 ASTVVNAMIEGGILLSLTAKNSTPLLHISSCIPDLLKR    188
                     .|||:||:|||||::||..|:..|:||||..||:|||.
RBAM_002990__    151 ISTVLNALIEGGIIVSLAKKDKMPILHISKQIPNLLKT    188


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