Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00494 and RBAM_003050
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence pep-align/BSNT_00494___ycdB.1.9828.seq
# -bsequence pep-align/RBAM_003050___ycdB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00494___ycdB-RBAM_003050___ycdB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00494___ycdB-RBAM_003050___ycdB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00494___ycdB
# 2: RBAM_003050___ycdB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 482
# Identity: 230/482 (47.7%)
# Similarity: 304/482 (63.1%)
# Gaps: 24/482 ( 5.0%)
# Score: 1074.5
#
#
#=======================================
BSNT_00494___ 1 MKGAAFVKKEGLKQKALEIGRVPTHLKLEIEDYGSDDKRAYFCWTDPQDE 50
.:.||.|||.||.||.||...:..:|:|..|: ..|.|.|..|.
RBAM_003050__ 1 -----MMNKEELKQLALRIGNVPARYESNVEEYREDE--VLFWWEDKNDP 43
BSNT_00494___ 51 NIGIIVELGPDGELESLSRDIEPESGKRLSEEKLEDIMRQFVETHHPGAL 100
..||:|||..||:|:.|||.........|||..::..||.|:|||.||||
RBAM_003050__ 44 EAGIMVELDRDGKLKYLSRPAFQTDLPALSESDIKKRMRAFLETHRPGAL 93
BSNT_00494___ 101 SAFVREENDHAYGDKVRFSYVQMEAGLPLPMSGFMADVSLSGEIVYFRYY 150
:.|..|.:..|....||:|||||..||.||::||..|::::||:..|.|:
RBAM_003050__ 94 AEFELENSGSANDGDVRYSYVQMADGLQLPLTGFYIDLAVTGEVTGFSYH 143
BSNT_00494___ 151 GEAGSIIKPKRVADVEEALAFIKKDVEFDLLFEVLHRSVYKNGDDQPHLV 200
|:|..:|:|:.:||..||||...|.:|.:|||.|||:|||..|||:||||
RBAM_003050__ 144 GKADDLIRPETIADKREALAHFVKHIEAELLFTVLHQSVYVQGDDKPHLV 193
BSNT_00494___ 201 YEPECRAITVPADLVQEEQGGVDN----DDDYRE--PESFPLPLFEGIRE 244
||.......:.||| :||...:|. :||.|. |.|.|.| ..|
RBAM_003050__ 194 YEIVSPTRPISADL-KEENAELDEYEELEDDTRPYVPISRPAP----EAE 238
BSNT_00494___ 245 KADPDSMIGIENGFVKEREADLGDGRIGIVWRNPDDPVYQPADKSMDSWF 294
|...:.|||:.:||.||||.|||||||||.|| |:.......|||.:|.|
RBAM_003050__ 239 KMSINDMIGLHDGFYKERETDLGDGRIGIAWR-PEKTKSAREDKSFESLF 287
BSNT_00494___ 295 KGRTHQVLKTIYNKETGKLEGVMSFMEKKGPLTVTLAECEKIALRFLFAL 344
|.|...||||:::||:|:|.|||||::.:|....:..||..:|:|||||:
RBAM_003050__ 288 KERNEHVLKTMHDKESGRLTGVMSFIKVEGEPRFSEEECHHMAIRFLFAM 337
BSNT_00494___ 345 FPNADQYFRIRYDEKDEE-ENAVAGFTFEAHCHGVPIRFGQIRICVSRQT 393
||.||||||::|||.|:| || .|.|::|...||.:|||:.|||||::|
RBAM_003050__ 338 FPEADQYFRVQYDEPDDEGEN--VGLTYKACSGGVDLRFGEGRICVSKKT 385
BSNT_00494___ 394 GDITVYMGPDIDPNKLAAIDPIPAISVEQAKAIFWQHFKVELGWEREYGD 443
|.:||||.|:|||.:|..|||:|::::|:||....:..|.||.|:|.|.|
RBAM_003050__ 386 GLVTVYMPPEIDPKELQEIDPVPSLTMEEAKDAIRRAIKAELAWDRCYDD 435
BSNT_00494___ 444 DE-EHSYRLVYKPVFPRFIDAHTGEPVFSSW- 473
|. ...||||||||||.||:|||||.:.|..
RBAM_003050__ 436 DSCGKVYRLVYKPVFPLFIEAHTGEAITSLIG 467
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