Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00538 and RBAM_003280

See DNA alignment / Visit BSNT_00538 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:17
# Commandline: needle
#    -asequence pep-align/BSNT_00538.1.9828.seq
#    -bsequence pep-align/RBAM_003280___amyE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00538-RBAM_003280___amyE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00538-RBAM_003280___amyE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00538
# 2: RBAM_003280___amyE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 659
# Identity:     427/659 (64.8%)
# Similarity:   451/659 (68.4%)
# Gaps:         182/659 (27.6%)
# Score: 2282.0
# 
#
#=======================================

BSNT_00538         1 MFAKRFKTSLLPLFAGFLLLFYLVLAGPAAASAETANKSNELTAPSIKSG     50
                     ||.||||||||||||||||||:|||:|||||:||||||||::||.|:|:|
RBAM_003280__      1 MFEKRFKTSLLPLFAGFLLLFHLVLSGPAAANAETANKSNKVTASSVKNG     50

BSNT_00538        51 TILHAWNWSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWY    100
                     |||||||||||||..|||||.||||.||||||||||||||||||||.|||
RBAM_003280__     51 TILHAWNWSFNTLTQNMKDIRDAGYAAIQTSPINQVKEGNQGDKSMRNWY    100

BSNT_00538       101 WLYQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTTSDYAA    150
                     ||||||||||||||||||||||:||||||:||:|||||||||||||||.|
RBAM_003280__    101 WLYQPTSYQIGNRYLGTEQEFKDMCAAAEKYGVKVIVDAVINHTTSDYGA    150

BSNT_00538       151 ISNEVKSIPNWTHGNTQIKNWSDRWDVTQNSLPGLYDWNTQNTQVQSYLK    200
                     ||:|:|.|||||||||||||||||||||||||.||||||||||:||.|||
RBAM_003280__    151 ISDEIKRIPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTEVQVYLK    200

BSNT_00538       201 RFLERALNDGADGFRFDAAKHIELPDDGSYGSQFWPNITNTSAEFQYGEI    250
                     |||||||||||||||:||||||||||||:|||||||||||||||||||||
RBAM_003280__    201 RFLERALNDGADGFRYDAAKHIELPDDGNYGSQFWPNITNTSAEFQYGEI    250

BSNT_00538       251 LQDSASRDAAYANYMDVTASNYGHSIRSALKNRNLGVSNISHYASDVSAD    300
                     ||||||||.||||||:|||||||||||||||||||.||||||||||||||
RBAM_003280__    251 LQDSASRDTAYANYMNVTASNYGHSIRSALKNRNLSVSNISHYASDVSAD    300

BSNT_00538       301 KLVTWVESHDTYANDDEESTWMSDDDIRLGWAVIASRSGSTPLFFSRPEG    350
                     ||||||||||||||||||||||||||||||||||.|||||||||||||||
RBAM_003280__    301 KLVTWVESHDTYANDDEESTWMSDDDIRLGWAVIGSRSGSTPLFFSRPEG    350

BSNT_00538       351 GGNGVRFPGKSQIGDRGSALFEDQAITAVNRFHNVMAGQHEELSNPNGNN    400
                     |||||||||||||||||||||:||||||||.||||||||.||||||||||
RBAM_003280__    351 GGNGVRFPGKSQIGDRGSALFKDQAITAVNTFHNVMAGQPEELSNPNGNN    400

BSNT_00538       401 QIFMNQRGSHGVVLANAGSSSVSINTATKLPDGRYDNKAGAGSFQVNDGK    450
                     |:|||||||.||||||||||||:|||:.|||||||||:||||||||.:||
RBAM_003280__    401 QVFMNQRGSKGVVLANAGSSSVTINTSAKLPDGRYDNRAGAGSFQVANGK    450

BSNT_00538       451 LTGTINARSVAVLYPDDIEIRCNTFFQ-----------------------    477
                     |||||||||.||||||||....:.|.:                       
RBAM_003280__    451 LTGTINARSAAVLYPDDIGNAPHVFLENYQTGAVHSFNDQLTVTLRANAK    500

BSNT_00538       477 --------------------------------------------------    477
                                                                       
RBAM_003280__    501 TTKAVYQINNGQQTAFKDGDRLTIGKGDPIGTTYNIKLTGTNGEGAARTQ    550

BSNT_00538       477 --------------------------------------------------    477
                                                                       
RBAM_003280__    551 EYTFVKKDPSQTNIIGYQNPDHWGQVNAYIYKHDGGRAIELTGSWPGKAM    600

BSNT_00538       477 --------------------------------------------------    477
                                                                       
RBAM_003280__    601 TKNANGMYTLTLPENTDTANAKVIFNNGSAQVPGQNQPGFDYVQNGLYNN    650

BSNT_00538       477 ---------    477
                              
RBAM_003280__    651 SGLNGYLPH    659


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