Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00717 and RBAM_004330

See DNA alignment / Visit BSNT_00717 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:29
# Commandline: needle
#    -asequence pep-align/BSNT_00717___kipR.1.9828.seq
#    -bsequence pep-align/RBAM_004330___kipR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00717___kipR-RBAM_004330___kipR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00717___kipR-RBAM_004330___kipR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00717___kipR
# 2: RBAM_004330___kipR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 250
# Identity:     197/250 (78.8%)
# Similarity:   228/250 (91.2%)
# Gaps:           1/250 ( 0.4%)
# Score: 1005.0
# 
#
#=======================================

BSNT_00717___      1 MQNKNKTVVKSMALLNLFLHKPSLTLSELVSLTGMPKTSVHRMVSSLEEM     50
                     |:||||||:|||.||:|||.:|||:|:|||||:.|||||||||.|||||.
RBAM_004330__      1 MENKNKTVIKSMELLHLFLTEPSLSLNELVSLSEMPKTSVHRMASSLEET     50

BSNT_00717___     51 GFLSRDASGAYSLGLVFLEFGQLVADRLDIRKIAKPVMEELCREVDEAVQ    100
                     |||:|.|.|.|.|||:||:|||||::||||||||||:|||||||||||||
RBAM_004330__     51 GFLTRAADGRYQLGLIFLQFGQLVSERLDIRKIAKPIMEELCREVDEAVQ    100

BSNT_00717___    101 LIMRDGNEAIYVEKIEGTQTVRLYTAIGRRSPLYAGACARSILSFLPREE    150
                     ||||||:||||||||||||||||||||||||||||||||||||||||:||
RBAM_004330__    101 LIMRDGDEAIYVEKIEGTQTVRLYTAIGRRSPLYAGACARSILSFLPKEE    150

BSNT_00717___    151 IEAYIKQTELISIGSGTITDPEKLLQEIDASVQNGYTVSYSELENYTAAI    200
                     |:.||::|:|.:|.|||:||..:|||.|:.|:|:|||:||||||:|||||
RBAM_004330__    151 IDTYIQKTKLAAIASGTMTDRAELLQSIERSLQSGYTISYSELEDYTAAI    200

BSNT_00717___    201 GAPIFNHKRQVAAGISIAGFEARFTEDRLPYLTEKVKDAALQISRKIGYT    250
                     |||||||:.:||||||||||||||:||||||||||||.||..||.|:|| 
RBAM_004330__    201 GAPIFNHEGKVAAGISIAGFEARFSEDRLPYLTEKVKTAAQHISEKLGY-    249


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