Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00740 and RBAM_004470

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########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:30
# Commandline: needle
#    -asequence pep-align/BSNT_00740.1.9828.seq
#    -bsequence pep-align/RBAM_004470___lrpC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00740-RBAM_004470___lrpC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00740-RBAM_004470___lrpC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00740
# 2: RBAM_004470___lrpC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 180
# Identity:     114/180 (63.3%)
# Similarity:   135/180 (75.0%)
# Gaps:          36/180 (20.0%)
# Score: 610.0
# 
#
#=======================================

BSNT_00740         1 MFGKHSFLHAFSRELYLSFTKIPEIMCTKSKKKDVEMKLDQIDLNIIEEL     50
                                                         ||||.:||:||:||
RBAM_004470__      1 ------------------------------------MKLDNVDLSIIKEL     14

BSNT_00740        51 KKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLP    100
                     ::||||||||||||||||.||||||||||||||:||:|||::||||:|||
RBAM_004470__     15 QRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLP     64

BSNT_00740       101 VSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEA    150
                     |||||||||||..|::||:|||::||||||:|:|||||||||:||:|||.
RBAM_004470__     65 VSCIVEATVKNGKYDQFKTYIQSIPNIEFCFRVAGAACYMLKMNADSLET    114

BSNT_00740       151 VEDFINKTSPYAQTVTHVIFSEIDTKNGRG    180
                     :|.|||:||||||||||||||||||||...
RBAM_004470__    115 IEHFINRTSPYAQTVTHVIFSEIDTKNVLD    144


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