Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00763 and RBAM_004760

See DNA alignment / Visit BSNT_00763 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:32
# Commandline: needle
#    -asequence pep-align/BSNT_00763___ydbD.1.9828.seq
#    -bsequence pep-align/RBAM_004760___ydbD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00763___ydbD-RBAM_004760___ydbD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00763___ydbD-RBAM_004760___ydbD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00763___ydbD
# 2: RBAM_004760___ydbD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 273
# Identity:     242/273 (88.6%)
# Similarity:   254/273 (93.0%)
# Gaps:           0/273 ( 0.0%)
# Score: 1278.0
# 
#
#=======================================

BSNT_00763___      1 MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWNTR     50
                     ||.|||.|||||||||||||||||||||||||:|||||||||||||||||
RBAM_004760__      1 MFTHTKKLQHPAKPDRPDPLFAKKMQEILGGQYGEISVAMQYLFQGWNTR     50

BSNT_00763___     51 GNEKYKDLLMDTATEELGHVEMIATMIARLLEDAPLDQQEKAAEDPVIGS    100
                     ||||||||||||||||:|||||||||||||||||||.:|||||:||||||
RBAM_004760__     51 GNEKYKDLLMDTATEEIGHVEMIATMIARLLEDAPLAEQEKAADDPVIGS    100

BSNT_00763___    101 ILGGMNPHHAIVSGLGAMPESSTGVPWSGGYIVASGNLLADFRANLNAES    150
                     ||||||||||||||||||||||||||||.|||||||||||||||||||||
RBAM_004760__    101 ILGGMNPHHAIVSGLGAMPESSTGVPWSAGYIVASGNLLADFRANLNAES    150

BSNT_00763___    151 QGRLQVARLFEMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEAQEGPV    200
                     |||||||||:||||||||||||||||||||||||||||||||||.||||:
RBAM_004760__    151 QGRLQVARLYEMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEEQEGPI    200

BSNT_00763___    201 VPGTFPKALEKQEFSHQLINFSEGEESAQQNWLNEKAPDGEAFEYVKEAK    250
                     ||.|||||||||.|||:||:||:|.|||:||||.|.|||||.|||.||.|
RBAM_004760__    201 VPSTFPKALEKQSFSHKLIHFSDGGESAEQNWLKETAPDGEPFEYEKEPK    250

BSNT_00763___    251 TFGEKPELKPTPPFVHNTLPGRE    273
                     ..||..:|.|.||:|||||||||
RBAM_004760__    251 AHGEIAKLDPVPPYVHNTLPGRE    273


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