Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00766 and RBAM_004790

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:32
# Commandline: needle
#    -asequence pep-align/BSNT_00766___dctR.1.9828.seq
#    -bsequence pep-align/RBAM_004790___dctR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00766___dctR-RBAM_004790___dctR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00766___dctR-RBAM_004790___dctR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00766___dctR
# 2: RBAM_004790___dctR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 226
# Identity:     173/226 (76.5%)
# Similarity:   194/226 (85.8%)
# Gaps:           3/226 ( 1.3%)
# Score: 877.0
# 
#
#=======================================

BSNT_00766___      1 MARKEWKVLLIEDDPMVQEVNKDFITTVKGVTVCATAGNGEEGMKLIKEE     50
                        .:.||||||||||||||||:|||.|.|.:|.|||.:|:||::|||:.
RBAM_004790__      1 ---MDIKVLLIEDDPMVQEVNKEFITGVSGFSVIATAADGDEGIRLIKDL     47

BSNT_00766___     51 QPDLVILDVYMPKKDGIKTLQEIRKQKLEVDVIVVSAAKDKETISLMLQN    100
                     :|.||:|||||||||||||||||||||||||||:||||||||||.|||||
RBAM_004790__     48 RPGLVVLDVYMPKKDGIKTLQEIRKQKLEVDVIIVSAAKDKETIQLMLQN     97

BSNT_00766___    101 GAIDYILKPFKLERMRQALEKYKQYKQKIEANDTLSQEQLDAILNIPQQA    150
                     ||.|||||||||||||||||.|||||:|||.:||:||||||.:|.|||..
RBAM_004790__     98 GAADYILKPFKLERMRQALENYKQYKRKIEEHDTMSQEQLDMLLKIPQNP    147

BSNT_00766___    151 VQDLPKGLNHFTMNEVTAFLKQQTASLSAEEVAKALGIARVTARRYLDYL    200
                     .:|||||||||||||:..::||||..|||||.||||||||||||||||:|
RBAM_004790__    148 SRDLPKGLNHFTMNEILTYMKQQTEPLSAEEAAKALGIARVTARRYLDFL    197

BSNT_00766___    201 EKTGIIKLDVQYGGVGRPVNRYVLKG    226
                     ||.|.||||:||||||||||||....
RBAM_004790__    198 EKDGQIKLDIQYGGVGRPVNRYKFVR    223


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