Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_00804 and RBAM_005070

See DNA alignment / Visit BSNT_00804 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:35
# Commandline: needle
#    -asequence pep-align/BSNT_00804___sigB.1.9828.seq
#    -bsequence pep-align/RBAM_005070___sigB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00804___sigB-RBAM_005070___sigB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00804___sigB-RBAM_005070___sigB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00804___sigB
# 2: RBAM_005070___sigB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 262
# Identity:     242/262 (92.4%)
# Similarity:   254/262 (96.9%)
# Gaps:           0/262 ( 0.0%)
# Score: 1218.0
# 
#
#=======================================

BSNT_00804___      1 MTQPSKTTKLTKDEVDRLISDYQTKQDEQAQETLVRVYTNLVDMLAKKYS     50
                     |.|||||||||||||||||.|:||..:::||||||.||||||:|||||||
RBAM_005070__      1 MAQPSKTTKLTKDEVDRLIRDFQTHDNKEAQETLVEVYTNLVEMLAKKYS     50

BSNT_00804___     51 KGKSFHEDLRQVGMIGLLGAIKRYDPVVGKSFEAFAIPTIIGEIKRFLRD    100
                     ||||||||||||||||||||||||||.|||||||||||||||||||||||
RBAM_005070__     51 KGKSFHEDLRQVGMIGLLGAIKRYDPEVGKSFEAFAIPTIIGEIKRFLRD    100

BSNT_00804___    101 KTWSVHVPRRIKELGPRIKMAVDQLTTETQRSPKVEEIAEFLDVSEEEVL    150
                     |||||||||||||||||||||||||||||||||||||||.||||||||||
RBAM_005070__    101 KTWSVHVPRRIKELGPRIKMAVDQLTTETQRSPKVEEIAAFLDVSEEEVL    150

BSNT_00804___    151 ETMEMGKSYQALSVDHSIEADSDGSTVTILDIVGSQEDGYERVNQQLMLQ    200
                     |||||||||||||||||||||:|||||||||||||||:||||||||:|::
RBAM_005070__    151 ETMEMGKSYQALSVDHSIEADADGSTVTILDIVGSQEEGYERVNQQMMIK    200

BSNT_00804___    201 SVLHVLSDREKQIIDLTYIQNKSQKETGDILGISQMHVSRLQRKAVKKLR    250
                     |||||||||||||||||::|||||||||||||||||||||||||||||||
RBAM_005070__    201 SVLHVLSDREKQIIDLTFVQNKSQKETGDILGISQMHVSRLQRKAVKKLR    250

BSNT_00804___    251 EALIEDPSMELM    262
                     ||||.|||||||
RBAM_005070__    251 EALIGDPSMELM    262


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.