Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_01031 and RBAM_006360
See
DNA alignment /
Visit
BSNT_01031 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence pep-align/BSNT_01031___ydiB.1.9828.seq
# -bsequence pep-align/RBAM_006360___ydiB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_01031___ydiB-RBAM_006360___ydiB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01031___ydiB-RBAM_006360___ydiB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01031___ydiB
# 2: RBAM_006360___ydiB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 158
# Identity: 130/158 (82.3%)
# Similarity: 145/158 (91.8%)
# Gaps: 0/158 ( 0.0%)
# Score: 710.0
#
#
#=======================================
BSNT_01031___ 1 MKQLKWRTVNPEETKAIAKLAAAFAKPGDVLTLEGDLGAGKTTFTKGFAE 50
||.|:|||.|||||||:|||||:.|||||:||||||||||||||||||||
RBAM_006360__ 1 MKTLQWRTKNPEETKAVAKLAASLAKPGDILTLEGDLGAGKTTFTKGFAE 50
BSNT_01031___ 51 GLGITRIVNSPTFTIIKEYNDGVLPLYHMDVYRMEDESEDLGLDEYFHGQ 100
||||||:||||||||||||:||.||||||||||||||||||||:|||.||
RBAM_006360__ 51 GLGITRVVNSPTFTIIKEYHDGSLPLYHMDVYRMEDESEDLGLEEYFEGQ 100
BSNT_01031___ 101 GVCLVEWAHLIEEQLPQERLQIVIKRAGDDEREITFTAVGNRYEMLCEEL 150
||||:||||||::|||.|||||||.||||:.|:|||||.|.|||.||||:
RBAM_006360__ 101 GVCLIEWAHLIQDQLPAERLQIVITRAGDEARDITFTACGTRYETLCEEI 150
BSNT_01031___ 151 SRHDNISN 158
::|||..|
RBAM_006360__ 151 NKHDNTGN 158
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.