Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_04576 and RBAM_012760
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:01
# Commandline: needle
# -asequence pep-align/BSNT_04576___yubD.1.9828.seq
# -bsequence pep-align/RBAM_012760___yubD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_04576___yubD-RBAM_012760___yubD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04576___yubD-RBAM_012760___yubD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04576___yubD
# 2: RBAM_012760___yubD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 525
# Identity: 321/525 (61.1%)
# Similarity: 393/525 (74.9%)
# Gaps: 20/525 ( 3.8%)
# Score: 1583.5
#
#
#=======================================
BSNT_04576___ 1 MKTKHYWVISLLAVLAVGPGLMSNTALSSVQGLVQKAVGTSVFTSVNPIL 50
||.||:|:||||||||||||||||||||:||.||::.||...|.|.:||:
RBAM_012760__ 1 MKEKHHWIISLLAVLAVGPGLMSNTALSAVQSLVRQTVGGENFDSFHPII 50
BSNT_04576___ 51 IGNMAFALLVPAGPLLRKKFGARPVYLASLPVFILGSLLIACSGDIAWMA 100
||||||||.|||||.|||:||:||||:.|:...::|:||.|.:.||..:|
RBAM_012760__ 51 IGNMAFALFVPAGPYLRKRFGSRPVYMISIAAGVIGALLAAVTNDIYPLA 100
BSNT_04576___ 101 AGRFLQGAATGVMLMIMIPMLVLSFPIERRNYALLVLIGGFYGSVIIGTI 150
|||||||||.|.||||||||||||||||||||||.|||||||||||:||:
RBAM_012760__ 101 AGRFLQGAAAGTMLMIMIPMLVLSFPIERRNYALFVLIGGFYGSVIMGTV 150
BSNT_04576___ 151 LGTIATSCGHWRWLFFIFGTLSLIGVAVSYFFLHDEHHGASDQEQPLDHA 200
|||.|.|.|||.|||.|||.||..|:..||.:|.|:.| .:.::.|.|..
RBAM_012760__ 151 LGTAAASAGHWHWLFGIFGLLSFFGLIFSYMWLRDDAH-KNAEKCPFDGI 199
BSNT_04576___ 201 EILLSVFLAAASAVSFIFLQKWGLSSGYVWIGFGVTLCLLIGLLIVEYKV 250
..||:...|..:|.:||.|.|||.||.....|||.::.:|:.|||::|:.
RBAM_012760__ 200 GFLLAGVSAVLTAYTFIHLPKWGFSSWQTLAGFGGSIVILLILLIMQYRN 249
BSNT_04576___ 251 KNPFISIKLMLLPKPVLGLLIIAAGTITVAVSLSAFQGLLRQMYDISQEH 300
::..|||||||:|||:||:.:||||:|::|||||||.|.|:..|.:||..
RBAM_012760__ 250 EHALISIKLMLIPKPILGVFMIAAGSISIAVSLSAFHGELQTAYHMSQTQ 299
BSNT_04576___ 301 LILLHLTLLIGVAIAAILSALFYDKVGPGMLGIIGGLILVFVNFQWLHMQ 350
||.|:.:||.||||||::|||.|||||||||||.|.:|||||||||:...
RBAM_012760__ 300 LIFLYASLLGGVAIAAVISALAYDKVGPGMLGITGSVILVFVNFQWMTAD 349
BSNT_04576___ 351 DRSSLYMFAALFIMLAAGTGLTVAAGLMGAAMGGPLPDLVKRMTAVQFLR 400
....|.:||.||:||||||||.|||||||||:|||||:||||||||||||
RBAM_012760__ 350 HHIPLILFAGLFVMLAAGTGLIVAAGLMGAALGGPLPELVKRMTAVQFLR 399
BSNT_04576___ 401 LFVYMGVPILIGFFTKKDA------ARQSGSVQDSMMTAYHDLFFISFIL 444
||:|||.|:|||:|||:|| ||.:.|..|.:|..|.|||.|:|||
RBAM_012760__ 400 LFIYMGAPVLIGYFTKRDASGTLRGARGTQSPHDLLMGTYSDLFLIAFIL 449
BSNT_04576___ 445 SVLLVCLSFCMNATGMGHKLAHKPHDKAKTASEKPAVSAEGLSKATVKSY 494
|:|||||||.|||||||||||||||...|.|:|:|:..|....: :
RBAM_012760__ 450 SLLLVCLSFVMNATGMGHKLAHKPHAVRKQAAEQPSPQAPEPIR-----H 494
BSNT_04576___ 495 KVINDTEYRNALRNLQK-------- 511
:||.|.|||:|:|..|:
RBAM_012760__ 495 QVIPDHEYRSAVRQFQRHHISKNSM 519
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