Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04403 and RBAM_018290

See DNA alignment / Visit BSNT_04403 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:52
# Commandline: needle
#    -asequence pep-align/BSNT_04403.1.9828.seq
#    -bsequence pep-align/RBAM_018290___bioW.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04403-RBAM_018290___bioW.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04403-RBAM_018290___bioW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04403
# 2: RBAM_018290___bioW
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 256
# Identity:     126/256 (49.2%)
# Similarity:   155/256 (60.5%)
# Gaps:          46/256 (18.0%)
# Score: 668.0
# 
#
#=======================================

BSNT_04403         1 --------------MNGSHEDGGKHISGGERLIPFHEMKHTVNALLEKGL     36
                                   .|..||.||||||||||||.:..::..|:.||.||.
RBAM_018290__      1 MREETYYSVRMRASRNAPHEQGGKHISGGERLITYSGLQEAVDGLLHKGF     50

BSNT_04403        37 SHSRGKPDFMQIQFEEVHESIKTIQPLPVYTNEVSCPGEGQKLARLLLEK     86
                     |||||.|||||||.|.::|.|:||:||||..::...|.:||.:||.||:|
RBAM_018290__     51 SHSRGIPDFMQIQLESINEPIETIRPLPVAFHQSDTPEKGQAIARKLLQK    100

BSNT_04403        87 EGVSRDVIEKAYEQIPEWSDVRGAVLFDIHTGKRMDQTKEKGVRVSRMDW    136
                     .|:...:||||||.|.|:::.||||||||..|:|:|....:|||||||||
RBAM_018290__    101 AGIPPHMIEKAYENIAEYAEARGAVLFDIRAGERIDGRGNRGVRVSRMDW    150

BSNT_04403       137 PDANFEKWALHSHVPAHSRIKEALALASKVSRHPAAIAELCWSDDPDYIT    186
                     |..:|:|||...::|.:||||||.|:|:||..||..||||||||||||||
RBAM_018290__    151 PSHDFQKWAFTHNMPENSRIKEAHAIAAKVCAHPGIIAELCWSDDPDYIT    200

BSNT_04403       187 GYVAGKKMGYQRITAMKEYGTEEG--------------------------    210
                     ||||.||:|||||..||..|.|.|                          
RBAM_018290__    201 GYVAAKKLGYQRIAKMKNAGDESGCRIFFTDGSIDTESCIHFLEKQPVFI    250

BSNT_04403       210 ------    210
                           
RBAM_018290__    251 QREENI    256


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.