Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03990 and RBAM_024590

See DNA alignment / Visit BSNT_03990 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:18
# Commandline: needle
#    -asequence pep-align/BSNT_03990___yrrC.1.9828.seq
#    -bsequence pep-align/RBAM_024590___yrrC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03990___yrrC-RBAM_024590___yrrC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03990___yrrC-RBAM_024590___yrrC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03990___yrrC
# 2: RBAM_024590___yrrC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 798
# Identity:     704/798 (88.2%)
# Similarity:   753/798 (94.4%)
# Gaps:           6/798 ( 0.8%)
# Score: 3661.0
# 
#
#=======================================

BSNT_03990___      1 MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKA     50
                         .|||.:||:||:||.::||||||||||||||||||.|||||||||.
RBAM_024590__      1 ----MDQLNIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKV     46

BSNT_03990___     51 VSVTGYFPALQEEETYTFYGKIVTHPKFGLQFQAEHFKKEIPTTKEGIIQ    100
                     ||||||||.|||:||||||||..||||||||||||||||||||||||||.
RBAM_024590__     47 VSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQAEHFKKEIPTTKEGIIH     96

BSNT_03990___    101 YLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADT    150
                     ||||||||||||||||||||||||.|:||||.|||||||||::||||||.
RBAM_024590__     97 YLSSDLFEGIGKKTAEEIVKKLGDGALNKILTDASVLYDVPKMSKKKADK    146

BSNT_03990___    151 LAGALQRHQGLEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQL    200
                     |||.||||||||||||||||:|||||||||||||||:|||||||||||||
RBAM_024590__    147 LAGELQRHQGLEQIMISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQL    196

BSNT_03990___    201 VKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETTCLSEGHTYIE    250
                     |||||||||.||||||.:||||||||||:|||||||:|:|||||||||||
RBAM_024590__    197 VKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSEGHTYIE    246

BSNT_03990___    251 TEQLIIDTQSLLNQSAREGQRITEMDAANAIIALGENKDIVIEDGRCYFP    300
                     |:||||:||:|||||| ||.|:||||||:.||||||:||||||..|||||
RBAM_024590__    247 TKQLIINTQTLLNQSA-EGGRVTEMDAADGIIALGESKDIVIEGERCYFP    295

BSNT_03990___    301 SLFYAEQNVAKRVKHIASQTEYENQFPESEFLLALGELEERMNVQYAPSQ    350
                     |||||||||||||..||:||||.:||||||||||||||||||||||||||
RBAM_024590__    296 SLFYAEQNVAKRVLDIAAQTEYADQFPESEFLLALGELEERMNVQYAPSQ    345

BSNT_03990___    351 KEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD    400
                     |:|||||||||||||||||||||||||:||||||.|||||||||..||||
RBAM_024590__    346 KDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKD    395

BSNT_03990___    401 EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIE    450
                     ||||::||||||||||||||||||||||||||||||||||||:.||||||
RBAM_024590__    396 EAFPVLLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIE    445

BSNT_03990___    451 GKLLIIDEASMLDIWLANHLFKAIPDHIQIIIVGDEDQLPSVGPGQVLRD    500
                     |||:|||||||||||||:|||||:|.|||:|:||||||||||||||||||
RBAM_024590__    446 GKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGDEDQLPSVGPGQVLRD    495

BSNT_03990___    501 LLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFI    550
                     ||||:|:||||||||||||||||||||||.||.||||..|||||||||||
RBAM_024590__    496 LLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFI    545

BSNT_03990___    551 RCGGSQIKEVVEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQD    600
                     ||..|||||||::||:||||||||::|||||||||||||||||||::|||
RBAM_024590__    546 RCNSSQIKEVVDQVVSNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQD    595

BSNT_03990___    601 ILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEITSIFYA    650
                     |:||||||||||||||||||||||||||||||||||||||||||.|||||
RBAM_024590__    596 IMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIVSIFYA    645

BSNT_03990___    651 KENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVL    700
                     |||||||||.||||||||:|||||||:|||||||||||||||||||||||
RBAM_024590__    646 KENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVL    695

BSNT_03990___    701 PVVKGYYRMLRRNLLYTAITRAKKFLILCGEEEALEWGVKNNDATVRQTS    750
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_024590__    696 PVVKGYYRMLRRNLLYTAITRAKKFLILCGEEEALEWGVKNNDATVRQTS    745

BSNT_03990___    751 LKNRLSVQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQQ    798
                     |||||:.|.|||||||.||||||||||:|||||||||||||||:|:. 
RBAM_024590__    746 LKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA-    792


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_03990 and RBAM_024590

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
