Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04873 and RBAM_029950

See DNA alignment / Visit BSNT_04873 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:25
# Commandline: needle
#    -asequence pep-align/BSNT_04873.1.9828.seq
#    -bsequence pep-align/RBAM_029950.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04873-RBAM_029950.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04873-RBAM_029950.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04873
# 2: RBAM_029950
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 85
# Identity:      59/85 (69.4%)
# Similarity:    69/85 (81.2%)
# Gaps:           4/85 ( 4.7%)
# Score: 309.0
# 
#
#=======================================

BSNT_04873         1 MDNQQQS-QMPPSVISTKDHLYLNDMLNWNLLAMKKAHFMAQQCQDQTLK     49
                     |:||:|: .:||:||||||||||.|||||||||||||||||:.||:||||
RBAM_029950        1 MNNQEQNGNLPPAVISTKDHLYLEDMLNWNLLAMKKAHFMAEHCQNQTLK     50

BSNT_04873        50 QELDRIGHMHHDHYQRILKHLQP---GQQQSGYIQ     81
                     ||||:||.||..|||.||..|.|   ||..:||:|
RBAM_029950       51 QELDQIGRMHQKHYQHILGRLNPDQGGQTTTGYMQ     85


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.