Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05005 and RBAM_030710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:33
# Commandline: needle
# -asequence pep-align/BSNT_05005___yvaA.1.9828.seq
# -bsequence pep-align/RBAM_030710___yvaA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05005___yvaA-RBAM_030710___yvaA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05005___yvaA-RBAM_030710___yvaA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05005___yvaA
# 2: RBAM_030710___yvaA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 358
# Identity: 247/358 (69.0%)
# Similarity: 291/358 (81.3%)
# Gaps: 12/358 ( 3.4%)
# Score: 1300.0
#
#
#=======================================
BSNT_05005___ 1 MITLLKGRRKVDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTE 50
:.||:||||||||||.|||.|||||||:|||.|:||||||
RBAM_030710__ 1 ----------MKTIQVGILGYGLSGKVFHAPLLDVLDDYQIKKVMTSRTE 40
BSNT_05005___ 51 EVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHAMACIQAGKHV 100
|||||.|.||.|..:|:||.||.|:|||||||||:|||.||.|:.||||.
RBAM_030710__ 41 EVKRDLPGAEAVRAIEDITGDPDIDLVIVTTPSGMHYESAMKCLLAGKHT 90
BSNT_05005___ 101 VMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLISEGS 150
|:|||||||:.|.|.|:|.|::||||||||||||||||||||:|||.:|:
RBAM_030710__ 91 VVEKPMTATSAEAEELRRTAEDKGVLLSVYHNRRWDNDFLTIQKLIRDGA 140
BSNT_05005___ 151 LEDINTYQVSYDRYRPEVQARWREKEGIATGTLYDLGSHIIDQTLHLFGM 200
|:||:|||||||.|.|.||.:||||.|.|||||||||||||||||.||||
RBAM_030710__ 141 LQDIHTYQVSYDLYNPVVQEKWREKNGPATGTLYDLGSHIIDQTLLLFGM 190
BSNT_05005___ 201 PKAVTANVMAQRENAETVDYFHLTLDYGKLQAILYGGSIVPANGPRYQIH 250
|::|||:||.||:|:||||.|...|.|||||.||..||:..|:|||||||
RBAM_030710__ 191 PESVTAHVMKQRDNSETVDNFLAALHYGKLQVILQSGSMNAASGPRYQIH 240
BSNT_05005___ 251 GKDSSFIKYGIDGQEDALRAGRKPEDDSWGADDPEFYGQLTTIRGSGKKT 300
|:::||||||:|||||||.||:||.|||||||||:.:|:||......:.|
RBAM_030710__ 241 GRNASFIKYGMDGQEDALSAGKKPIDDSWGADDPDNFGELTIAADEKRHT 290
BSNT_05005___ 301 ETIPSVNGSYLTYYRKIAESIREGAALPVTAEEGINVIRIIEAAMKSSKE 350
|||||.||||||||:.:|:||..|..|||||:|||:|||:||||||||::
RBAM_030710__ 291 ETIPSENGSYLTYYKLLADSILNGKPLPVTAKEGIDVIRVIEAAMKSSEQ 340
BSNT_05005___ 351 KRTIMLEH 358
||||.|
RBAM_030710__ 341 KRTIAL-- 346
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