Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03882 and RBAM_030880

See DNA alignment / Visit BSNT_03882 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:10
# Commandline: needle
#    -asequence pep-align/BSNT_03882___yrdF.1.9828.seq
#    -bsequence pep-align/RBAM_030880___yrdF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03882___yrdF-RBAM_030880___yrdF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03882___yrdF-RBAM_030880___yrdF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03882___yrdF
# 2: RBAM_030880___yrdF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 101
# Identity:      56/101 (55.4%)
# Similarity:    71/101 (70.3%)
# Gaps:          10/101 ( 9.9%)
# Score: 296.0
# 
#
#=======================================

BSNT_03882___      1 MRKIMIDGRDFENIEVLHDVLKDKLDFPDYYGGNLDALWDCLTGWVDLPL     50
                     |..::|||:|..:.|.||.:|||:|||||:||.||:|||||||||::.||
RBAM_030880__      1 MEIVIIDGKDVTSTEALHRILKDQLDFPDFYGENLNALWDCLTGWIEYPL     50

BSNT_03882___     51 TLVLINFEFSKKFLGSYANDVLEVLQEAQEELKDEFKIIIE---------     91
                     |||..|||.|:|.||..|:||||:.|||||||.:.|.|.|:         
RBAM_030880__     51 TLVWKNFEISQKELGLDADDVLELFQEAQEELGNRFVIQIDQPSAGTTDR    100

BSNT_03882___     91 -     91
                      
RBAM_030880__    101 H    101


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