Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05332 and RBAM_032220

See DNA alignment / Visit BSNT_05332 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:46
# Commandline: needle
#    -asequence pep-align/BSNT_05332___yvoA.1.9828.seq
#    -bsequence pep-align/RBAM_032220___yvoA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05332___yvoA-RBAM_032220___yvoA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05332___yvoA-RBAM_032220___yvoA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05332___yvoA
# 2: RBAM_032220___yvoA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 243
# Identity:     195/243 (80.2%)
# Similarity:   219/243 (90.1%)
# Gaps:           0/243 ( 0.0%)
# Score: 1014.0
# 
#
#=======================================

BSNT_05332___      1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMT     50
                     |.|:||||||||:|||||||||||||||:.|..|||||||||||||||||
RBAM_032220__      1 MQIDKQSPIPIYFQIMEQLKTQIKNGELKADALLPSEREYAEQFGISRMT     50

BSNT_05332___     51 VRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTP    100
                     ||||||||||||.|||.|||||||||.||||.|||||||||||:||||.|
RBAM_032220__     51 VRQALSNLVNEGFLYRQKGRGTFVSKLKMEQPLQGLTSFTEDMRSRGMKP    100

BSNT_05332___    101 GSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIP    150
                     ||||.:||||.:||||::|||||:|:::|||.|||||||||||||:|:||
RBAM_032220__    101 GSRLAEYQLIQATEELSSILGCGYPATLHKIIRVRLANDIPMAIEASYIP    150

BSNT_05332___    151 FELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGI    200
                     |:.||:|:.||||||:|:|||.||.:|||||||||||.||:.|||.:|||
RBAM_032220__    151 FDKAGKLDASHFQSSMYEHIEAYNQMPISRAKQELEPGAASEEEAELLGI    200

BSNT_05332___    201 QKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRLS    243
                     |.|||||.||||||||:||||||.||.||||||||||||||:.
RBAM_032220__    201 QPGAPVLYIKRTTYLQDGTAFEHVKSAYRGDRYTFVHYMDRVK    243


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