Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05643 and RBAM_034100
See
DNA alignment /
Visit
BSNT_05643 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:08
# Commandline: needle
# -asequence pep-align/BSNT_05643___ywlD.1.9828.seq
# -bsequence pep-align/RBAM_034100___ywlD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05643___ywlD-RBAM_034100___ywlD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05643___ywlD-RBAM_034100___ywlD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05643___ywlD
# 2: RBAM_034100___ywlD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 185
# Identity: 143/185 (77.3%)
# Similarity: 171/185 (92.4%)
# Gaps: 0/185 ( 0.0%)
# Score: 742.0
#
#
#=======================================
BSNT_05643___ 1 MSDLFIGELITLSIMAFALGMDAFSVGLGMGMVKLRKKQIFYIGFIIGLF 50
||:||||||::|||||||||.|||||||||||::|:|||||:||.:||||
RBAM_034100__ 1 MSNLFIGELVSLSIMAFALGTDAFSVGLGMGMIQLKKKQIFHIGVVIGLF 50
BSNT_05643___ 51 HVIMPLAGMAAGNMLSGLLGVLAVYIGGALLFVLGVQMLMASFKQSEERF 100
||:|||||||||::|||.||:|||||||:|||:|||||::|:||||:...
RBAM_034100__ 51 HVMMPLAGMAAGHLLSGFLGMLAVYIGGSLLFILGVQMIIAAFKQSDGPL 100
BSNT_05643___ 101 MSPAGPGLLLFAIGVSLDSFSVGLSLGIYGSHPFLTITLFGLFSMMLTWL 150
:||||.|||||||||||||||||||||:.||:|||.:||||:||.:|||.
RBAM_034100__ 101 ISPAGSGLLLFAIGVSLDSFSVGLSLGMNGSNPFLAVTLFGVFSTVLTWA 150
BSNT_05643___ 151 GLLVGKQVQSWLGTYSEALGGIILIVFGLKLLLPI 185
|||.|::||||||:|||||||.|||.||||||||:
RBAM_034100__ 151 GLLAGRKVQSWLGSYSEALGGAILIGFGLKLLLPV 185
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.