Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05796 and RBAM_035130

See DNA alignment / Visit BSNT_05796 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:18
# Commandline: needle
#    -asequence pep-align/BSNT_05796___spsD.1.9828.seq
#    -bsequence pep-align/RBAM_035130___spsD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05796___spsD-RBAM_035130___spsD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05796___spsD-RBAM_035130___spsD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05796___spsD
# 2: RBAM_035130___spsD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 289
# Identity:     173/289 (59.9%)
# Similarity:   223/289 (77.2%)
# Gaps:           2/289 ( 0.7%)
# Score: 928.0
# 
#
#=======================================

BSNT_05796___      1 MYTVKENVSKELIEEFLQSRQLTLDVPYQFSLGLFENSRLQGVLLYEDSL     50
                     ||.::||:::::|..||..:.:..:. |:.||.|.|.:.||||:|||:|.
RBAM_035130__      1 MYRLRENLAQDMIHTFLHQKGIQPEA-YESSLCLLEENSLQGVILYENSS     49

BSNT_05796___     51 WESKVLQKKVMNVKLLAANSTGQLKRLFEAFYTVRQMDETDFIFVRVPAE    100
                     |||::.:|.::||||.||||.|||||||:.||..|:...|||||:::|||
RBAM_035130__     50 WESQLFRKNIINVKLAAANSAGQLKRLFQEFYAARRAAGTDFIFIKIPAE     99

BSNT_05796___    101 DIGAAHVIQQQPSSYFVGSLLKLAMPPSFYDKTPPFFELGPPEPGDTEAI    150
                     ||||..|:||.|::|||||||||..|...|:.||| ||:....|||||||
RBAM_035130__    100 DIGAMQVVQQLPNAYFVGSLLKLVSPVRVYNSTPP-FEITEAGPGDTEAI    148

BSNT_05796___    151 CELARDSFTKSRYFQDPHLSRDAANKIFQEWTRNNLNGRAAVNIVAKHNG    200
                     ..||||:||||||:||||||.::||.:|:||.|||..|||::...|.:.|
RBAM_035130__    149 SRLARDAFTKSRYYQDPHLSYESANLLFEEWARNNAEGRASLQFAATYKG    198

BSNT_05796___    201 EVIGYLQGLSRDDECILDLMAVKPGFEGKRIAFHLLANLIEQPETQKHRT    250
                     |.:|::||||:.||.:|||||||||||||...|||.|::|||....:|:|
RBAM_035130__    199 ETVGFVQGLSKGDEFVLDLMAVKPGFEGKGAGFHLAAHVIEQSLRFQHKT    248

BSNT_05796___    251 VTAGTQLHNVRAIRLYERMGFTAEQSYYYYHIWPGKEAK    289
                     |:|||||||||||||||||||.|:.||||||:||||||.
RBAM_035130__    249 VSAGTQLHNVRAIRLYERMGFKADASYYYYHVWPGKEAD    287


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