Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05872 and RBAM_035660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:23
# Commandline: needle
# -asequence pep-align/BSNT_05872___epr.1.9828.seq
# -bsequence pep-align/RBAM_035660___epr.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05872___epr-RBAM_035660___epr.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05872___epr-RBAM_035660___epr.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05872___epr
# 2: RBAM_035660___epr
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 685
# Identity: 375/685 (54.7%)
# Similarity: 470/685 (68.6%)
# Gaps: 104/685 (15.2%)
# Score: 1865.0
#
#
#=======================================
BSNT_05872___ 1 MKNMSCKLVVSVTLFFSFLTIGPLAHAQNSSEKEVIVVYKNKAGKETILD 50
...:.|.:::..|.....:....|||: :.:::|||||||:.|||:.:|
RBAM_035660__ 1 -MYHTLKPIMAAALCVGLFSAAAPAHAE-THDRDVIVVYKNQNGKESAID 48
BSNT_05872___ 51 SDADVEQQYKHLPAVAVTADQETVKELKQDPDILYVENNVSFTAADSTDF 100
|.|||||.|:|||||||:||.:|||:|||||||||||:||||.|||.:|.
RBAM_035660__ 49 SGADVEQTYQHLPAVAVSADSQTVKDLKQDPDILYVEDNVSFQAADGSDI 98
BSNT_05872___ 101 KVLSDGTDTSDNFEQWNLEPIQVKQAWKAGLTGKNIKIAVIDSGISPHDD 150
:.||....:|....||::||.|||||||.|||||.:|:|||||||.||||
RBAM_035660__ 99 RPLSAAQSSSYALPQWDIEPTQVKQAWKEGLTGKKVKVAVIDSGIYPHDD 148
BSNT_05872___ 151 LSIAGGYSAVSYTSSYKDDNGHGTHVAGIIGAKHNGYGIDGIAPEAQIYA 200
||||||||||||||||||||||||||||||.|||:|||||||||:.::||
RBAM_035660__ 149 LSIAGGYSAVSYTSSYKDDNGHGTHVAGIIAAKHDGYGIDGIAPDVRLYA 198
BSNT_05872___ 201 VKALDQNGSGDLQSLLQGIDWSIANGMDIVNMSLGTTSDSKILHDAVNKA 250
|||||:.|:|||:|||:.|||||||.|||:||||||.:|||||||||:||
RBAM_035660__ 199 VKALDRKGAGDLKSLLKAIDWSIANKMDIINMSLGTNADSKILHDAVDKA 248
BSNT_05872___ 251 YEQGVLLVAASGNDGNGKPVNYPAAYSSVVAVSATNEKNQLASFSTTGDE 300
|::|:::|||:|||||.||||||.|||||.||||:.|||.||:|||||.:
RBAM_035660__ 249 YKKGIVIVAAAGNDGNKKPVNYPGAYSSVTAVSASTEKNGLAAFSTTGKQ 298
BSNT_05872___ 301 VEFSAPGTNITSTYLNQYYATGSGTSQATPHAAAMFALLKQRDPAETNVQ 350
:||:|||||||||||||.|||..|||||.||...|||||:|:.|.|||.|
RBAM_035660__ 299 IEFTAPGTNITSTYLNQMYATADGTSQAAPHVTGMFALLRQKYPEETNTQ 348
BSNT_05872___ 351 LREEMRRNIVDLGTAGRDQQFGYGLIQYKAQATDSAYAAAEQAVKKAEQT 400
||::|::|:.|||..|||.:|||||:||..:.. :.||:||.|||:|
RBAM_035660__ 349 LRQQMQQNVKDLGAPGRDSRFGYGLVQYHVKQK----SFAERAVIKAEKT 394
BSNT_05872___ 401 KAQTDINKAQELVSQLPGSDAKTALQKRLDKVQSYRNVKDAKDKVANAEK 450
|.|.|||:|:..||:|..|..||||:.|::|||:.|||.||:|||..
RBAM_035660__ 395 KKQADINQAKTAVSKLSKSKGKTALESRINKVQTARNVTDARDKVRT--- 441
BSNT_05872___ 451 YKTQQTVDTAQTAINKLPNGTDKKNLQKRLDQVKRYIASKQAKDKVAKAE 500
||
RBAM_035660__ 442 ------------------------------------------------AE 443
BSNT_05872___ 501 KSKKKTDVDSAQSAIGKLPASSEKTSLQKRLNKVKSTNLKTAQQSVSAAE 550
|.||||.|::|||||.||||.|||..||||||.|.|:.||||:.||..||
RBAM_035660__ 444 KQKKKTAVNAAQSAIRKLPAGSEKKGLQKRLNAVNSSLLKTAEASVKQAE 493
BSNT_05872___ 551 KKSTDANAAKAQSAVNQLQAGKDKTALQKRLDKVKKKVAAAEAKKVETAK 600
||:::|:.||||.||:::|.||:|.||:||||::|.|:...:|:.
RBAM_035660__ 494 KKTSEASTAKAQKAVSEIQPGKEKNALEKRLDRIKDKLNRQQARD----- 538
BSNT_05872___ 601 AKVKKAEKDKTKKSKASAQSAVNQLKASNEKTKLQKRLNAVKPKSNQKPL 650
|||.|||.||||:|::||:||::||.|.|||.||||:.|::.|
RBAM_035660__ 539 -KVKTAEKTKTKKAKSAAQTAVSRLKPSAEKTSLQKRVRAIRVK------ 581
BSNT_05872___ 651 RLAFQVLKVFYILRTSHTTFFPSIVQAFHTIAIQP 685
RBAM_035660__ 581 ----------------------------------- 581
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