Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_06196 and RBAM_037360

See DNA alignment / Visit BSNT_06196 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:39
# Commandline: needle
#    -asequence pep-align/BSNT_06196___yycJ.1.9828.seq
#    -bsequence pep-align/RBAM_037360___yycJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_06196___yycJ-RBAM_037360___yycJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06196___yycJ-RBAM_037360___yycJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06196___yycJ
# 2: RBAM_037360___yycJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 264
# Identity:     243/264 (92.0%)
# Similarity:   254/264 (96.2%)
# Gaps:           0/264 ( 0.0%)
# Score: 1275.0
# 
#
#=======================================

BSNT_06196___      1 MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDD     50
                     |.||||||||||||||||||||:|:||||||||||||||||.:||||:||
RBAM_037360__      1 MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEKIGRKIDD     50

BSNT_06196___     51 VDGIFVTHEHSDHIKGLGVVARKYKLPIYANEKTWKAMENQIGKIDTDQK    100
                     |||||||||||||||||||:||||.||:||||||||||||||||:||.||
RBAM_037360__     51 VDGIFVTHEHSDHIKGLGVIARKYGLPVYANEKTWKAMENQIGKLDTGQK    100

BSNT_06196___    101 FVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVS    150
                     |:||||:||||||||||||||||||||||||||||.||||||||||||||
RBAM_037360__    101 FLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVS    150

BSNT_06196___    151 DRMKGIIRSANVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAA    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_037360__    151 DRMKGIIRSANVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAA    200

BSNT_06196___    201 LAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASKGFVTGETFDL    250
                     |||||||||.||||||||||||||||||||||||||||:||||.||||.|
RBAM_037360__    201 LAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAKGFVAGETFQL    250

BSNT_06196___    251 YDTDPKKATPLCAV    264
                     :|||||..||||||
RBAM_037360__    251 FDTDPKIPTPLCAV    264


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.