Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04363 and BL00040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:31
# Commandline: needle
# -asequence dna-align/BSNT_04363___amyX.1.5803.seq
# -bsequence dna-align/BL00040___amyX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04363___amyX-BL00040___amyX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04363___amyX-BL00040___amyX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04363___amyX
# 2: BL00040___amyX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2425
# Identity: 1409/2425 (58.1%)
# Similarity: 1409/2425 (58.1%)
# Gaps: 560/2425 (23.1%)
# Score: 3744.5
#
#
#=======================================
BSNT_04363___ 1 AT----GGTCAGCATCCGCCGCAGCTTCGAAGCGTATGTCGATGATATGA 46
|| ||| |||.|||||...||.|||||.|||.|||||||.||||
BL00040___amy 1 ATGCCGGGT----ATCAGCCGCCCTTTTGAAGCTTATCTCGATGAAATGA 46
BSNT_04363___ 47 ATATCATTACCGTTCTGATTCCTGCTGAACAAAAGGA----------AAT 86
..|..||.||.|||.|..|||| ||| || ||.
BL00040___amy 47 GAACGATCACTGTTTTAGTTCC----GAA------GAGCCGTGCGTCAAG 86
BSNT_04363___ 87 CATGACA--CCGCCGTTTCGGCTTGA-----------GACAGAAACAACA 123
| || || ||.||.||||.|||||| ||.|||....|.|
BL00040___amy 87 C-TG-CAGTCCTCCTTTTCTGCTTGAAGATGATCAAGGAGAGAGGATAGA 134
BSNT_04363___ 124 GATTTTCCTCTGGCTGT-------CAG--GGAGGAATACTCCCTTGAAGC 164
|.||| |.|| ||| |||| |||||.|.
BL00040___amy 135 GCTTT--------CGGTAAAAGCGCAGGTGGAG---------CTTGAGGA 167
BSNT_04363___ 165 AAAATACAAGTACGT------------CTGCGTATCCGACCATCCTGTGA 202
|.|||.||||||.|| |||| ||| ||..
BL00040___amy 168 ACAATTCAAGTATGTTCTTGAAAGCAGCTGC-------ACC-----GTTC 205
BSNT_04363___ 203 CATTTGGAAAAATCCATTGCGTCAGAGCATCCAGCGGCCACAAA------ 246
||||.||||.|.|.|| ||.||.||.|.|.| .|.|||
BL00040___amy 206 CATTCGGAAGAGTTCA------CAAAGTATGCTGTG--AAGAAAGCGTCT 247
BSNT_04363___ 247 --ACGGATCTCCAAATTGGCGCTGTCATCCG-GA--CGTCTGCGTTTGAT 291
||.||.||.|||||.|||.|||| |.|| || || |.||||||||.
BL00040___amy 248 GGACAGACCTGCAAATCGGCTCTGT--TACGAGAAGCG-CGGCGTTTGAC 294
BSNT_04363___ 292 GACGAATTTTATTATGACGGAGAGCTGGGCGCCGTTTATACCGCGGATCA 341
.|.|..||||.|||||||||....||.|||||..||||| |||
BL00040___amy 295 AAGGCTTTTTTTTATGACGGCCGCCTCGGCGCTTTTTAT--------TCA 336
BSNT_04363___ 342 --------TACCGTATTTAAAGTATGGGCGCCTGCTGCAACCTCAGCTGC 383
|||..|||||||.|||||||||||..|.||.|...|.||.||
BL00040___amy 337 AAAGGAAGTACTTTATTTAAGGTATGGGCGCCGACCGCGAGTGCGGCAGC 386
BSNT_04363___ 384 TGTCAAGCT-----------------TTCACACCCCAATAAAAGCGGGTG 416
..||||||| ||||.|| |||
BL00040___amy 387 GATCAAGCTGGAGGACCCTGATTCGCTTCAAAC-------AAA------- 422
BSNT_04363___ 417 CACATTCCAAATGACTCGGTTG----GAAAAA--GGCGTCTATGCCGTTA 460
.||.||.||||||| || |||||| |||||.|.||..||.|
BL00040___amy 423 TACTTTTCAAATGA------TGCGCAGAAAAAAGGGCGTTTTTGAGGTAA 466
BSNT_04363___ 461 CGGTTACAGGTGACCTTCACGG------------ATATGAG-TATTTGTT 497
||||...|||.||.||..|||| ||||||| |.|.|||
BL00040___amy 467 CGGTCGAAGGCGATCTAAACGGCTGGTCCTATTTATATGAGCTTTATGT- 515
BSNT_04363___ 498 TTGCATCTGCAACAATTCAGAATGGATGGAA----------ACAGTTGAC 537
.|||| |||| |||||.||.
BL00040___amy 516 -------------------AAATG---GGAAGCCGTTATTGACAGTCGAT 543
BSNT_04363___ 538 CCGTATGCCAAGGCTGTGACTGTAAATGGAGAGCTGGGCGTCGTCTTGCG 587
||.|||||.||.||.||.||.|.|||.||.||....|||||.||.||...
BL00040___amy 544 CCTTATGCAAAAGCCGTTACGGCAAACGGTGAAAAAGGCGTTGTATTAGA 593
BSNT_04363___ 588 CCCGGATCAAATGAA-ATGGA---------CTGCTCCTCTTAA-ACCATT 626
.||.||..||.|.|| .|||| | ||||| || ||
BL00040___amy 594 TCCAGAGGAAGTCAAGGTGGAAAAACACCGC-GCTCC----AAGAC---- 634
BSNT_04363___ 627 CTCACACCCTGTG-GATGCCGTCATCTATGAGACGCACCTTCGCGACTTC 675
.|||||..|.||| |||||.||.||.||||||...|||.|.|||||.|||
BL00040___amy 635 TTCACAGTCCGTGCGATGCGGTTATATATGAGGTTCACATCCGCGATTTC 684
BSNT_04363___ 676 TCCATCCATGAAAACAGCGGCATG----ATAAACAAGGGAAAATACTTAG 721
||.||.||||||.|||||||.||| ||||| ||.|||||..|.|
BL00040___amy 685 TCGATTCATGAAGACAGCGGTATGCGCCATAAA----GGCAAATATGTTG 730
BSNT_04363___ 722 CATTAACGGA------AACTGATACACAAACCGCAAATGGCAG-TTCT-- 762
|.||.||.|| ||||||.|| |.|| |||.| ||||
BL00040___amy 731 CTTTTACTGAGGACGGAACTGAAAC---ATCC------GGCGGCTTCTCA 771
BSNT_04363___ 763 TCGGGACTGGCGTATGTAAAAGAGCTTGGTGTTACACATGTGGAGCTTCT 812
.|||||.|.||.|||.|.||||||||.||.||.||.||..|.|||.||||
BL00040___amy 772 ACGGGAATCGCCTATTTGAAAGAGCTCGGCGTCACCCACATCGAGGTTCT 821
BSNT_04363___ 813 GCCGGTGAATGATTTTGCCGGAGTTGATGAAGAGAAGCCGCTTGATGCA- 861
|||..|..|.||||||||||||||.||| |||..|.|.|.|||| ||
BL00040___amy 822 GCCCTTTCACGATTTTGCCGGAGTGGAT---GAGCTGTCTCCTGAT-CAA 867
BSNT_04363___ 862 ---TACAATTGGGGATATAACCCGCTTCATTTCTTTGCCCCGGAGGGAAG 908
||.||||||||.||||||||.||.|||||...|||||||||.|||||
BL00040___amy 868 TCTTATAATTGGGGCTATAACCCCCTCCATTTTAATGCCCCGGAAGGAAG 917
BSNT_04363___ 909 CTATGC-CTCAAACCCTCATGATCCTCAAACG-AGAAAAACAGAGCTGAA 956
.|||.| ||| .|.||.|| ||.||.||||.| ||||..||.||||||||
BL00040___amy 918 TTATTCGCTC-GATCCGCA-GAACCCCAAATGCAGAATCACCGAGCTGAA 965
BSNT_04363___ 957 ACAAATGA-TCAATACCCTGCATCAGCACGG--TCTGCGAGTCATTCTGG 1003
|...|||| |||.| |.|||||..|.||||| |||.| ||.|||.|||
BL00040___amy 966 AACGATGATTCAGT-CGCTGCACAAACACGGCTTCTCC--GTGATTATGG 1012
BSNT_04363___ 1004 ATGTTGTTTTTAACCATGTGTATAAGAGGGAGAATTCCCCCTTTGAAAAG 1053
|||..||.|.|||.||||||||.||||||||.|..|||||.||||||||.
BL00040___amy 1013 ATGCCGTATATAATCATGTGTACAAGAGGGAAACGTCCCCTTTTGAAAAA 1062
BSNT_04363___ 1054 ACAGTGCCCGGTTATTTTTTCCGGCACGACGAATGTGGGATGCCGTCAAA 1103
||.||.|||||.|||||||||.|.||..|.||||..||..|.||.||..|
BL00040___amy 1063 ACGGTTCCCGGGTATTTTTTCAGACATAATGAATACGGTTTTCCATCCGA 1112
BSNT_04363___ 1104 CGGCACCGGCGTTGGCAATGATATTGCATCAGAAAGAAGGATGGCAAGAA 1153
|||.||.|||||.||.|||||||||||.||.||..|...|||||...|||
BL00040___amy 1113 CGGAACAGGCGTCGGAAATGATATTGCTTCTGAGCGGCTGATGGTGCGAA 1162
BSNT_04363___ 1154 AATTCATTGCGGATTGCGTGGTCTATTGGCTTGAAGAATACAATGCTGAC 1203
|||..|||...||||..||...|||||||||.||||||||..|||..|||
BL00040___amy 1163 AATATATTCTCGATTCTGTCCGCTATTGGCTGGAAGAATATGATGTCGAC 1212
BSNT_04363___ 1204 GGCTTCCGATTTGATCTCCTCGGCATTTTAGATATTGACACCGTGCTTTA 1253
|||.|.||.||||||.|..|.||||||.|.||||||||.|||||.|
BL00040___amy 1213 GGCATTCGTTTTGATTTAATGGGCATTCTTGATATTGAAACCGTCC---- 1258
BSNT_04363___ 1254 TATGAAAGAGAAAGCA--AC---------TAAGGCAAAGCCCGGAAT-CC 1291
|..|||.|| || .||.|.||||||.||..| ||
BL00040___amy 1259 -------GCCAAATCAGTACGCTTGCCGAGAATGTAAAGCCGGGCGTGCC 1301
BSNT_04363___ 1292 TGCTTTTTGGAGAAGGGTGGGATCTGGCTACACCGCTGCCGCATGAACAG 1341
| ||.||.|||||.||.||||||.|...|||.||||| || ||||
BL00040___amy 1302 T-CTGTTCGGAGAGGGCTGGGATTTAAATACCCCGCT------TG-ACAG 1343
BSNT_04363___ 1342 -------AAAGCTGCTTTGGCGAACGCGCCAAGAATGCCGGGCA------ 1378
|||||..|.||| ||| ||||||||..|
BL00040___amy 1344 CGGGCAAAAAGCAACATTG----------CAA-AATGCCGGAAAAGTTCC 1382
BSNT_04363___ 1379 -----TCGGCTTTTTTAATGATATGTTTCGTGACGCTGTAAAAGGGAACA 1423
|||||||||||||||||..|||..|..||||.||.|||||||..|
BL00040___amy 1383 GGCGGTCGGCTTTTTTAATGATCGGTTCAGGAACGCAGTCAAAGGGAGTA 1432
BSNT_04363___ 1424 CCTTTCACCTTA------------AGGCAGTAGGGTTTGCGCTCGGCAGC 1461
|.||..|.|||| |.||..||||| |.||.|
BL00040___amy 1433 CATTCGAGCTTAGCGACCGCGGATATGCTTTAGGG---------GACACC 1473
BSNT_04363___ 1462 GGTGAATCAGCACAAGCTGTGAT---GCATGGAATTGCCGGGTCTTCCGG 1508
|| |..|.||||.|.|.| |||.||.||||||||.||..|||
BL00040___amy 1474 GG------AAAAAAAGCGGCGCTTCAGCACGGTATTGCCGGTTCACCCG- 1516
BSNT_04363___ 1509 ATGGAAGGCATTAGCGCCGATTGTT----CCGGAACCAAGCCAGTCCATC 1554
||||.|| ||||.| |||||.|||
BL00040___amy 1517 ------------------GATTCTTGCAGCCGGCA------CAGTCAATC 1542
BSNT_04363___ 1555 AATTATGTCGAATCACACGACAATCACACCTTTTGGGATAAAATGAGCTT 1604
||||||||.||||..||.||||||||.||.||||||||||||||| ||.|
BL00040___amy 1543 AATTATGTGGAATGCCATGACAATCATACATTTTGGGATAAAATG-GCCT 1591
BSNT_04363___ 1605 TGCGCTTCCTCAAGAAAAT---GACAGCCGAAAGCGAAGC--AGGCAAAG 1649
|..|.|| |.|||||.|| |||| |.||| || || ||||||||
BL00040___amy 1592 TATGTTT--TGAAGAAGATGCGGACA--CTAAA-CG--GCTTAGGCAAAG 1634
BSNT_04363___ 1650 GCTTGCAGCCGCGATTATTTTGCTTGCCCAAGGGGTGCCGTTTATTCACA 1699
|||.||.|...||||..|..|||||.|.|||||.||.||.|||.|||||.
BL00040___amy 1635 GCTCGCGGTGTCGATCGTCCTGCTTTCGCAAGGCGTTCCATTTCTTCACG 1684
BSNT_04363___ 1700 GCGGCCAGGAATTTTTCCGGACGAAGCAGGGAGTGGA---AAACAGCTAT 1746
.|||.||||||||||.|||.||.|||.|.|| ||| .||||||||
BL00040___amy 1685 CCGGGCAGGAATTTTGCCGAACAAAGAATGG---GGACAGCAACAGCTA- 1730
BSNT_04363___ 1747 CA-ATCCAGTGACAGCATCAACCAGCTCGACTGGGATCGCCGT--GAAAC 1793
|| .|||.|.||...||||||..||||.||.|||||....||| |.|.|
BL00040___amy 1731 CAGGTCCGGAGATGACATCAATAAGCTTGATTGGGAAAAGCGTGCGGAGC 1780
BSNT_04363___ 1794 ATT-CAAAGAAGATGTTCACTATATCCGCAGGCTGATCTCGCTGAGAA-A 1841
.|| | ||.|||||..|.|||.|.|||..|||||||..||||.||| |
BL00040___amy 1781 TTTGC---GAGGATGTCGAATATGTGCGCCAGCTGATCCGGCTGCGAAGA 1827
BSNT_04363___ 1842 AGCGCATCCTGCATTCCGTCTTAGGTCCGC-------TGCAGACATC-CG 1883
||| |||||.||.||.||||| || .|.|||..|| .|
BL00040___amy 1828 AGC-CATCCCGCTTTTCGTCT-------GCAAAAAGAGGAAGAAGTCAAG 1869
BSNT_04363___ 1884 GCGCCATCTTGAATGCTT-----GACGCTAAAAGAACACCTTATCGCATA 1928
|.| ||||| |.||| ||||.| |.||.|.|..|.|..||.||
BL00040___amy 1870 GAG-CATCT----TTCTTTTATGGACGGT-ACAGGAGAGGTAACGGCCTA 1913
BSNT_04363___ 1929 CAGGCTTTATGATC-TTGACGAGGTTGACGAATGGAAAGATATCATTGTT 1977
||.|| |.|.||.| |||..|...||||....|||||.||.|||||.||.
BL00040___amy 1914 CAAGC-TGAAGAACATTGCAGCAATTGATCCCTGGAACGAAATCATAGTG 1962
BSNT_04363___ 1978 ATCCATCACGCGAGTCC--------------AGACTCCGTCGAGTGGAGT 2013
.|.||| .|||| ||||.| |..||
BL00040___amy 1963 GTGCAT------TGTCCGTTTGCAAAAAAGGAGACGC-------TTAAG- 1998
BSNT_04363___ 2014 CTGCCAAACG-------ACA-TACCTT-----------ATCGGCTTTTAT 2044
||||| || ||| || ||| ||| ||||||.
BL00040___amy 1999 CTGCC---CGATCAGAAACAGTA-CTTGCTGCACTGCGATC--CTTTTAC 2042
BSNT_04363___ 2045 GTGATCCATCAGGATTTCA---GGAAG----ACCCGGCAGAAA---TTAA 2084
|| || |||| ||||| |..|||.|.||| ||
BL00040___amy 2043 GT------TC-----TTCAATGGGAAGGTTCAAGCGGAAAAAAGGCTT-- 2079
BSNT_04363___ 2085 GAAAACGGTTGCAGTAAACGGCATCGGAACGGTTATCTTATATTTA-GCA 2133
|||.|| |||||||||||.|| .|||.||.|| || |.|
BL00040___amy 2080 -----CGGCTG-----AACGGCATCGGGAC--CTATGTTTTA--TACGAA 2115
BSNT_04363___ 2134 TCAGATCTTAAGAGTTTTGCTTGA- 2157
.|| .|||.|.||| ||.|
BL00040___amy 2116 CCA-----AAAGGGATTT--TTTAG 2133
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