Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00004 and BL00079

See Amino acid alignment / Visit BSNT_00004 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:40
# Commandline: needle
#    -asequence dna-align/BSNT_00004___recF.1.5803.seq
#    -bsequence dna-align/BL00079___recF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00004___recF-BL00079___recF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00004___recF-BL00079___recF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00004___recF
# 2: BL00079___recF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1127
# Identity:     891/1127 (79.1%)
# Similarity:   891/1127 (79.1%)
# Gaps:          28/1127 ( 2.5%)
# Score: 3466.5
# 
#
#=======================================

BSNT_00004___      1 TTGTATATCCAGAA-CTTAGAACTT-TCATCTTACCGCAACTACGACCAT     48
                     |||||||||||.|| ||||.|  || ||.||||||||.||.||.||.|  
BL00079___rec      1 TTGTATATCCAAAATCTTACA--TTATCGTCTTACCGTAATTATGAGC--     46

BSNT_00004___     49 GC--TGAACTTCAATTTGAAAATAAAGTAAATGTGATCATCGGAGAAAAC     96
                     ||  |||.|||||||||||.||.|||||.||.|||||.||||||||.|||
BL00079___rec     47 GCCTTGACCTTCAATTTGAGAACAAAGTGAACGTGATTATCGGAGAGAAC     96

BSNT_00004___     97 GCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGT-CTTGTCCATGG    145
                     ||.||.||.||.|||||..|.|||||.||||||||||| |||| |.||||
BL00079___rec     97 GCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTG-CGATGG    145

BSNT_00004___    146 CGAAATCGCACCGGACATCAAATGACAAAGAACTTATACGGTGGGACAAA    195
                     |||||||.||.|||||.||||||||.||||||||.|||||.|||||..||
BL00079___rec    146 CGAAATCCCATCGGACGTCAAATGATAAAGAACTCATACGATGGGATGAA    195

BSNT_00004___    196 GACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGC-GATCC    244
                     |||||||||||||||||.||.||.||.||.||..|||||||..| |.|||
BL00079___rec    196 GACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCTGTTCC    245

BSNT_00004___    245 CGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCAT    294
                     | ||.|||||.||.||.||||||||.||.|||||.||.||.||.||||||
BL00079___rec    246 C-ATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCAT    294

BSNT_00004___    295 ATTGAACAGCAAAAGCTCAGCCAGTATGTCGGGGCCCTCAACACCATTAT    344
                     |||||||||||.|||||.|||||||||||||||||..|||||||.|||||
BL00079___rec    295 ATTGAACAGCAGAAGCTGAGCCAGTATGTCGGGGCTGTCAACACGATTAT    344

BSNT_00004___    345 GTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAA    394
                     ||||||||||||.|||||||||||.|||||.|||||.|||||.||.||||
BL00079___rec    345 GTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAA    394

BSNT_00004___    395 GGCGGTTTCTTGACATGGAAATTGGACAGGTTTCTCCCGTCTATCTTCAT    444
                     |..|||||||.|||||||||||.||.||.||.||.||.||||||||||||
BL00079___rec    395 GAAGGTTTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCAT    444

BSNT_00004___    445 GATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGGAATCATTTTTTGAA    494
                     ||.||||||||||||||.|||||||||||.||.|||||||||||.|||||
BL00079___rec    445 GACCTTTCTCTTTACCAAAAAATCCTTTCACAACGGAATCATTTCTTGAA    494

BSNT_00004___    495 ACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGA    544
                     .|||||.|||||.|||||.|||||.||.|..||||||||.||.||.||||
BL00079___rec    495 GCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGA    544

BSNT_00004___    545 CCGATCAGCTTATAGAAGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAG    594
                     |.||.|||||||..|||.|.||.|||||.||.||..|.|||||.||.|||
BL00079___rec    545 CGGAACAGCTTACGGAATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAG    594

BSNT_00004___    595 TTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCATCTC    644
                     |||...|..|||||.||.||||||||.||||||||.|||.|.||.||.||
BL00079___rec    595 TTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAATTTC    644

BSNT_00004___    645 AAGAGGGCTTGAAGAACTTACCCTGAAATACCATACAGCTCTTGATGTAT    694
                     ||||||.||.|||||.||.||..|.||.||.|||||..|||||.|.||||
BL00079___rec    645 AAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTAT    694

BSNT_00004___    695 CAGATCCCCTAGATTTGTCGAAAATAGGA--GATAGCTATCAAGAAGCGT    742
                     |||||.|.|..||||||||||||||  ||  .||||.|||||||||.|||
BL00079___rec    695 CAGATTCGCCCGATTTGTCGAAAAT--GATCAATAGTTATCAAGAAACGT    742

BSNT_00004___    743 TTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGG    792
                     ||||||||||||||||.||||||||.||.||.||.||..|.||.|||||.
BL00079___rec    743 TTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGT    792

BSNT_00004___    793 CCTCATCGCGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGAC    842
                     ||.||..|.||||||||||||||||||||.||.||.||.|||||||||||
BL00079___rec    793 CCCCACAGGGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGAC    842

BSNT_00004___    843 GTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGTCCCTTAAGCTGG    892
                     .||.||.||.||.||.||||||||.|||||.||.|||||.|||||..|||
BL00079___rec    843 TTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGTCGCTTAAATTGG    892

BSNT_00004___    893 CGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTA    942
                     |.||.||.|||.||||.||.|||||.||.||||||||.||.|||.|.||.
BL00079___rec    893 CTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTT    942

BSNT_00004___    943 TTGGATGATGT----ACTGAGTGAACTGGATGATTATCGCCAGTCACACT    988
                     |||||||||||    .|.|||    |||||.||.|||||.|||||.||||
BL00079___rec    943 TTGGATGATGTTTTATCAGAG----CTGGACGACTATCGGCAGTCTCACT    988

BSNT_00004___    989 TGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGC   1038
                     ||||.||.||.||.||||||||.||.|||||.||.||.||||||||||||
BL00079___rec    989 TGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGC   1038

BSNT_00004___   1039 GTTGATGGCATTGATCACGAAACCTT--ACGTCAAGCAGGAATGTTCCGT   1086
                     ||||||||.||||||||..|||||||  |||  ||||.|.|||.||.|||
BL00079___rec   1039 GTTGATGGAATTGATCATAAAACCTTAAACG--AAGCGGAAATCTTTCGT   1086

BSNT_00004___   1087 GTGCAAAATGGTGCGTTAGTGAAGTGA   1113
                     ||..|||||||..||.||..|.|.|||
BL00079___rec   1087 GTTGAAAATGGCACGCTATCGGACTGA   1113


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