Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00008 and BL00082

See Amino acid alignment / Visit BSNT_00008 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:40
# Commandline: needle
#    -asequence dna-align/BSNT_00008___gyrA.1.5803.seq
#    -bsequence dna-align/BL00082___gyrA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00008___gyrA-BL00082___gyrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00008___gyrA-BL00082___gyrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00008___gyrA
# 2: BL00082___gyrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2483
# Identity:    1941/2483 (78.2%)
# Similarity:  1941/2483 (78.2%)
# Gaps:          31/2483 ( 1.2%)
# Score: 7525.5
# 
#
#=======================================

BSNT_00008___      1 ATGAGTGAACAAAACACACCACAAGTTCGTGAAATAAATATCAGTCAGGA     50
                     ||||||||||||.|.|..||.|||||||..|||.|.||||||||||||||
BL00082___gyr      1 ATGAGTGAACAACATAAGCCCCAAGTTCAGGAAGTCAATATCAGTCAGGA     50

BSNT_00008___     51 AATGCGTACGTCCTTCTTGGATTATGCAATGAGCGTTATCGTGTCCCGTG    100
                     ||||||.||.||.||.||.|||||.||||||||.|||||.||.|||||.|
BL00082___gyr     51 AATGCGCACATCTTTTTTAGATTACGCAATGAGTGTTATTGTTTCCCGCG    100

BSNT_00008___    101 CTCTTCCGGATGTTCGAGACGGTTTAAAACCGGTTCATAGACGGATTTTG    150
                     ||||||||||.||..||||||||.|.||.|||||.||.|||.|.||.|||
BL00082___gyr    101 CTCTTCCGGACGTAAGAGACGGTCTGAAGCCGGTGCACAGAAGAATATTG    150

BSNT_00008___    151 TATGCAATGAATGATTTAGGCATGACAAGTGACAAGCCTTATAAAAAATC    200
                     |||||.|||||.||..|.||.|||||||||||.|||||.|||||||||||
BL00082___gyr    151 TATGCGATGAACGACCTTGGGATGACAAGTGATAAGCCGTATAAAAAATC    200

BSNT_00008___    201 CGCGCGTATCGTTGGAGAAGTTATCGGGAAATACCACCCGCACGGTGATT    250
                     |||||||||.||.||.|||||||||||.||.||||||||.||||||||||
BL00082___gyr    201 CGCGCGTATTGTCGGCGAAGTTATCGGTAAGTACCACCCTCACGGTGATT    250

BSNT_00008___    251 CAGCGGTATATGAATCCATGGTTAGAATGGCTCAGGATTTCAACTACCGT    300
                     |.||.||.||.|||.|||||||.||||||||.||||||||.|||||.||.
BL00082___gyr    251 CTGCTGTTTACGAAGCCATGGTCAGAATGGCGCAGGATTTTAACTATCGG    300

BSNT_00008___    301 TATATGCTCGTTGACGGTCATGGAAACTTCGGTTCTGTTGACGGAGACTC    350
                     ||.|||||||||.|.||.||||||||||||||||||||||||||.|||||
BL00082___gyr    301 TACATGCTCGTTCAAGGCCATGGAAACTTCGGTTCTGTTGACGGCGACTC    350

BSNT_00008___    351 AGCGGCGGCCATGCGTTATACAGAAGCAAGAATGTCTAAAATCTCAATGG    400
                     .||.||||||||||||||.||||||||.||||||||||||||.|||||||
BL00082___gyr    351 GGCTGCGGCCATGCGTTACACAGAAGCGAGAATGTCTAAAATATCAATGG    400

BSNT_00008___    401 AGATTCTTCGCGACATCACAAAAGACACAATCGATTACCAGGATAACTAT    450
                     |.|||||.||||||||||..|||||||||||||||||||||||.||||||
BL00082___gyr    401 AAATTCTGCGCGACATCAATAAAGACACAATCGATTACCAGGACAACTAT    450

BSNT_00008___    451 GACGGGTCAGAAAGAGAACCTGTCGTTATGCCTTCAAGGTTCCCGAATCT    500
                     |||||.||.||||.|||.||.||.|||||||||.|.||.||.|||||..|
BL00082___gyr    451 GACGGTTCGGAAAAAGAGCCGGTTGTTATGCCTGCGAGATTTCCGAACTT    500

BSNT_00008___    501 GCTCGTGAACGGTGCTGCCGGCATTGCGGTAGGTATGGCAACAAACATTC    550
                     |||.||.|||||.||.|||||.|||||.|||||||||||.||||||||.|
BL00082___gyr    501 GCTTGTCAACGGAGCGGCCGGTATTGCTGTAGGTATGGCCACAAACATCC    550

BSNT_00008___    551 CTCCTCACCAGCTGGGAGAAATCATTGACGGTGTACTTGCTGTCAGTGAG    600
                     |.||.||.|||||.||.|||.|||||||||||||..|.||.|||||..|.
BL00082___gyr    551 CGCCGCATCAGCTCGGTGAAGTCATTGACGGTGTTTTGGCGGTCAGCAAA    600

BSNT_00008___    601 AATCCGGACATTACCATTCCAGAGCTTATGGAAGTCATTCCAGGGCCTGA    650
                     ||.||.||.||.||..||||.||..|.|||||..|||||||.||.||.||
BL00082___gyr    601 AACCCTGATATCACGCTTCCGGAATTGATGGAGATCATTCCTGGACCCGA    650

BSNT_00008___    651 TTTCCCGACCGCGGGTCAAATCTTGGGACGCAGCGGTATCCGGAAAGCAT    700
                     .|||||.||.||.||.|..|||||||||.|.|||||||||||.||.||.|
BL00082___gyr    651 CTTCCCTACAGCAGGGCTGATCTTGGGAAGAAGCGGTATCCGAAAGGCCT    700

BSNT_00008___    701 ACGAATCAGGCCGAGGCTCTATCACGATCCGGGCAAAAGCTGAGATCGAA    750
                     |.|||.|||||||.||.||.||.|||.|.||.||.||||||.|.||||||
BL00082___gyr    701 ATGAAACAGGCCGGGGATCAATTACGCTTCGAGCCAAAGCTCAAATCGAA    750

BSNT_00008___    751 CAAACATCTTCGGGTAAA---GAAAGAATTATCGTTACAGAGTTACCTTA    797
                     .||||||||||.||.|||   |.||..||||   ||||.||..||||.||
BL00082___gyr    751 GAAACATCTTCCGGCAAACCGGTAATCATTA---TTACGGAAATACCGTA    797

BSNT_00008___    798 CCAAGTAAATAAGGCGAAATTAATTGAGAAAATTGCTGATCTCGTAAGGG    847
                     ||||||.|||||.||.|...|.||.||.|||||.||.|||||.||..|.|
BL00082___gyr    798 CCAAGTGAATAAAGCAAGGCTGATCGAAAAAATCGCCGATCTAGTGCGCG    847

BSNT_00008___    848 ACAAAAAGATAGAGGGTATCACAGATCTGCGTGATGAGTCAGATCGTACA    897
                     |.||.||.||.||.||.||.||.|||||.||.|||||.|||||.||.|..
BL00082___gyr    848 ATAAGAAAATCGACGGCATTACGGATCTCCGCGATGAATCAGACCGAAAC    897

BSNT_00008___    898 GGTATGAGAATTGTCATTGAAATAAGACGCGATGCCAATGCAAATGTCAT    947
                     ||.|||.|.||.|||||||||.|.|||.|.|||||.|||||.|||||..|
BL00082___gyr    898 GGAATGCGCATCGTCATTGAACTGAGAAGGGATGCAAATGCCAATGTACT    947

BSNT_00008___    948 CTTAAACAATCTGTACAAACAAACTGCTCTACAAACATCTTTTGGCATCA    997
                     .|||||.||..|||||||.||.||.|||||.||||||||.||.|||||.|
BL00082___gyr    948 GTTAAATAACTTGTACAAGCAGACCGCTCTTCAAACATCATTCGGCATTA    997

BSNT_00008___    998 ACCTGCTTGCACTTGTTGATGGCCAGCCGAAAGT-TTTAACTCTTAAGCA   1046
                     |.||..|.||.||||||||.|||||||||||||| ||.|.|| |.|||||
BL00082___gyr    998 ATCTTTTGGCGCTTGTTGACGGCCAGCCGAAAGTATTGAGCT-TGAAGCA   1046

BSNT_00008___   1047 ATGCCTGGAGCATTACCTTGACCACCAAAAAGTTGTCATTAGACGCCGTA   1096
                     .||.|||||||||||.||.|||||.||||||||.||.||.|||.|.||||
BL00082___gyr   1047 GTGTCTGGAGCATTATCTCGACCATCAAAAAGTCGTGATCAGAAGGCGTA   1096

BSNT_00008___   1097 CTGCTTATGAATTGCGTAAAGCAGAAGCGAGAGCTCATA-TCTTGGAAGG   1145
                     ||||.|..||..|.||.|||||.||||||.|.||.|||| |||| ||.||
BL00082___gyr   1097 CTGCATTCGAGCTTCGCAAAGCGGAAGCGCGGGCCCATATTCTT-GAGGG   1145

BSNT_00008___   1146 ATTGAGAGTTGCACTGGATCATCTCGATGCAGTTATCTCCCTTATCCGTA   1195
                     .||||||||.||.||.|||||.||.||||.||||||.|||||.||..|.|
BL00082___gyr   1146 CTTGAGAGTGGCGCTTGATCACCTTGATGAAGTTATTTCCCTAATTAGAA   1195

BSNT_00008___   1196 ATTCTCAAACGGCTGAAATTGCGAGAACAGGTTTAATTGAACAATTCTCA   1245
                     ||||.||||||||||||||.||.|.||..||.||.|||||..|.||.||.
BL00082___gyr   1196 ATTCGCAAACGGCTGAAATCGCAAAAAACGGATTGATTGAGAAGTTTTCT   1245

BSNT_00008___   1246 CTGACAGAGAAGCAAGCACAAGCGATCCTTGACATGAGGCTCCAGCGTTT   1295
                     .||||.||.||.||.||.||.|||||..|.||||||.|.|||||||||||
BL00082___gyr   1246 TTGACTGAAAAACAGGCCCAGGCGATTTTGGACATGCGTCTCCAGCGTTT   1295

BSNT_00008___   1296 AACGGGACTGGAACGTGAAAAGATCGAAGAAGAATACCAATCTCTTGTTA   1345
                     |||.||.||||||||.|||||.||||||||.|||||.|||...||||||.
BL00082___gyr   1296 AACAGGGCTGGAACGCGAAAAAATCGAAGAGGAATATCAAAGCCTTGTTG   1345

BSNT_00008___   1346 AATTAATTGCAGAGCTAAAAGACATCTTGGCAAATGAATATAAAGTGCTT   1395
                     |..|.||||||||||||||||..|||||.|||.|.|||.|.|||||.|||
BL00082___gyr   1346 AGCTGATTGCAGAGCTAAAAGCAATCTTAGCAGACGAAGAGAAAGTTCTT   1395

BSNT_00008___   1396 GAGATCATTCGTGAAGAACTCACGGAAATCAAAGAGCGTTTTAACGATGA   1445
                     ||.||||||||.|||||.|||||.|||.|.||||||||.|||||.|||||
BL00082___gyr   1396 GAAATCATTCGGGAAGAGCTCACAGAAGTTAAAGAGCGCTTTAATGATGA   1445

BSNT_00008___   1446 AAGACGTACTGAGATCGTCACTTCTGGACTGGAGACAATTGAAGATGAAG   1495
                     ..|.||||||||.|||||.||.||.||.||.|||||.|||||.|||||||
BL00082___gyr   1446 GCGCCGTACTGAAATCGTGACATCGGGCCTTGAGACGATTGAGGATGAAG   1495

BSNT_00008___   1496 ATCTCATCGAGAGAGAAAATATCGTAGTTACTCTGACGCACAACGGATAC   1545
                     ||||||||..|.|.||.||||||||.||.|||.|.||.||.||||||||.
BL00082___gyr   1496 ATCTCATCACGCGCGAGAATATCGTTGTGACTTTAACTCATAACGGATAT   1545

BSNT_00008___   1546 GTCAAACGTCTTCCTGCATCAACTTACCGCAGTCAAAAACGGGGCGGAAA   1595
                     .||||||||||.|||.|.||.|||||||||||.||||||||||||||.||
BL00082___gyr   1546 ATCAAACGTCTGCCTTCTTCCACTTACCGCAGCCAAAAACGGGGCGGGAA   1595

BSNT_00008___   1596 AGGTGTACAAGGTATGGGAACAAACGAAGATGATTTCGTTGAACATTTGA   1645
                     |||..|.||.||.|||||.|||||.|||||.||.|||||||||||..|||
BL00082___gyr   1596 AGGCATTCAGGGCATGGGTACAAATGAAGACGACTTCGTTGAACACCTGA   1645

BSNT_00008___   1646 TATCTACGTCAACTCATGACACGATTCTCTTCTTCTCGAACAAGGGGAAA   1695
                     |.||.||.||.||.||||||||.|||||||||||||||||.||.|||||.
BL00082___gyr   1646 TTTCAACATCCACCCATGACACCATTCTCTTCTTCTCGAATAAAGGGAAG   1695

BSNT_00008___   1696 GTGTATCGTGCAAAAGGGTATGAAATCCCTGAATACGGCAGAACGGCAAA   1745
                     |||||.|||||.|||||.|||||.||||||||||.|||..|.||.||.||
BL00082___gyr   1696 GTGTACCGTGCGAAAGGATATGAGATCCCTGAATTCGGACGGACAGCGAA   1745

BSNT_00008___   1746 AGGAATCCCGATTATTAACCTGCTGGAGGTAGAAAAGGGTGAGTGGATCA   1795
                     .|||||.|||||||||||||||||.||.||.|||||.||.||.|||||||
BL00082___gyr   1746 GGGAATTCCGATTATTAACCTGCTTGAAGTGGAAAAAGGAGAATGGATCA   1795

BSNT_00008___   1796 ACGCGATTATTCCAGTCACG-GAATTCAATGCGGAGCTTTACCTTTTCTT   1844
                     |||||||||||||.|| |.| |||||..|||..|||..|||..|.|||||
BL00082___gyr   1796 ACGCGATTATTCCGGT-AGGCGAATTTGATGACGAGTCTTATTTGTTCTT   1844

BSNT_00008___   1845 CACTACAAAGCATGGGGTTTCAAAACGAACATCACTATCTCAATTCGCTA   1894
                     |||.|||||.||.||..|.||||||||.|||.|.||.|||||||||||.|
BL00082___gyr   1845 CACGACAAAACACGGAATATCAAAACGCACACCGCTTTCTCAATTCGCGA   1894

BSNT_00008___   1895 ATATCCGCAACAATGGTCTAATCGCTCTGAGTCTTCGTGAAGACGATGAA   1944
                     ||||||||||.|||||..|.|||||..|.||.||.||.||.||.||||||
BL00082___gyr   1895 ATATCCGCAATAATGGATTGATCGCCTTAAGCCTCCGCGATGAGGATGAA   1944

BSNT_00008___   1945 CTGATGGGTGTACGTCTGACTGATGGCACAAAACAAATCATCATTGGAAC   1994
                     .||||.|.|||.||.|||||.|||||.|..||||||||.||.||.||.||
BL00082___gyr   1945 TTGATCGCTGTCCGCCTGACGGATGGAAATAAACAAATTATTATCGGCAC   1994

BSNT_00008___   1995 GAAAAACGGTTTACTGATCCGTTTCCCTGAAACAGATGTTCGGGAGATGG   2044
                     |||.||||||.|.||.|||||||||||||||||||||||..||.|.||||
BL00082___gyr   1995 GAAGAACGGTCTGCTCATCCGTTTCCCTGAAACAGATGTAAGGCAAATGG   2044

BSNT_00008___   2045 GAAGAACTGCGGCGGGCGTAAAAGGCATCACCCTGACGGATGACGACGTT   2094
                     |||||||.||.||.|||||.||.|||||||..|||||.||||||||.|||
BL00082___gyr   2045 GAAGAACAGCAGCCGGCGTTAAGGGCATCAATCTGACAGATGACGATGTT   2094

BSNT_00008___   2095 GTTGTCGGCATGGAGATATTAGAGGAAGAATCACACGTCCTTATCGTTAC   2144
                     |||||||||||||||||.||.||.||.||.||||||||.||.|||||.||
BL00082___gyr   2095 GTTGTCGGCATGGAGATTTTGGAAGAGGATTCACACGTGCTAATCGTAAC   2144

BSNT_00008___   2145 TGAAAAAGGGTACGGAAAACGAACTCCGGCTGAAGAGTACAGAACCCAAA   2194
                     ||||||.||.||||||||||..||.||.|||..|||.|||||....||||
BL00082___gyr   2145 TGAAAAGGGCTACGGAAAACTGACGCCCGCTTCAGAATACAGGGTGCAAA   2194

BSNT_00008___   2195 GCCGGGGCGGAAAAGGACTCAAAA-CAGCGAAAATCACCGAGAACAACGG   2243
                     ||||.||.||||||||.||.|||| |.|| ||||||||.||.||.|||||
BL00082___gyr   2195 GCCGCGGAGGAAAAGGGCTGAAAACCTGC-AAAATCACAGAAAATAACGG   2243

BSNT_00008___   2244 CCAACTAGTAGCAGTGAAAGCTACTAAAGGTGAAGAGGATCTAATGATTA   2293
                     ....||.||..||||||||||.||.|.|||.|||||.|||.|||||||.|
BL00082___gyr   2244 ATCTCTTGTGACAGTGAAAGCAACGACAGGAGAAGAAGATTTAATGATCA   2293

BSNT_00008___   2294 TTACAGCTAGCGGCGTACTCATCAGAATGGACATCAATGATATCTCCATC   2343
                     |.|||||.||||||||..||||..|.|||||.||.||.||||||||||..
BL00082___gyr   2294 TCACAGCAAGCGGCGTGATCATTCGGATGGATATTAAAGATATCTCCACG   2343

BSNT_00008___   2344 ACCGGACGTGTCACTCAAGGTGTGCGTCTCATCAGAATGGCAGAAGAAGA   2393
                     ||||||||.|||||||||||||||||.||.|||.|..|.|..|||.||||
BL00082___gyr   2344 ACCGGACGCGTCACTCAAGGTGTGCGACTTATCCGCTTAGGTGAACAAGA   2393

BSNT_00008___   2394 GCATGTTGCTACAGTAGCTTTAGTAGAGAAAAACGAAGAAGATGAGAATG   2443
                     ||||||.||.||.||.||||||||.||.|      ||||.||.|||||.|
BL00082___gyr   2394 GCATGTCGCGACTGTCGCTTTAGTTGAAA------AAGATGAAGAGAACG   2437

BSNT_00008___   2444 A---AGAAGAACAAGAAGAAGTGTGA-------   2466
                     |   |||||||||.|||| .|..|||       
BL00082___gyr   2438 ATTCAGAAGAACAGGAAG-CGGATGAATCATAA   2469


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