Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_00008 and BL00082

See DNA alignment / Visit BSNT_00008 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:40
# Commandline: needle
#    -asequence pep-align/BSNT_00008___gyrA.1.5803.seq
#    -bsequence pep-align/BL00082___gyrA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00008___gyrA-BL00082___gyrA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00008___gyrA-BL00082___gyrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00008___gyrA
# 2: BL00082___gyrA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 822
# Identity:     742/822 (90.3%)
# Similarity:   790/822 (96.1%)
# Gaps:           1/822 ( 0.1%)
# Score: 3792.0
# 
#
#=======================================

BSNT_00008___      1 MSEQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRIL     50
                     ||||:.|||:|:||||||||||||||||||||||||||||||||||||||
BL00082___gyr      1 MSEQHKPQVQEVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRIL     50

BSNT_00008___     51 YAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYR    100
                     ||||||||||||||||||||||||||||||||||||||:|||||||||||
BL00082___gyr     51 YAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYR    100

BSNT_00008___    101 YMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY    150
                     ||||.||||||||||||||||||||||||||||||||||.||||||||||
BL00082___gyr    101 YMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKDTIDYQDNY    150

BSNT_00008___    151 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSE    200
                     ||||:||||||:||||||||||||||||||||||||||||:||||||||:
BL00082___gyr    151 DGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSK    200

BSNT_00008___    201 NPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIE    250
                     |||||:|||||:||||||||||.||||||||||||:||||||:||||:||
BL00082___gyr    201 NPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIE    250

BSNT_00008___    251 QTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTG    300
                     :|||||..||:||:|||||||:||||||||||||||:|||||||||||.|
BL00082___gyr    251 ETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNG    300

BSNT_00008___    301 MRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQC    350
                     ||||||:||||||||:|||||||||||||||||||||||||||||:||||
BL00082___gyr    301 MRIVIELRRDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLSLKQC    350

BSNT_00008___    351 LEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNS    400
                     |||||||||||||||||:|||||||||||||||||||||||.||||||||
BL00082___gyr    351 LEHYLDHQKVVIRRRTAFELRKAEARAHILEGLRVALDHLDEVISLIRNS    400

BSNT_00008___    401 QTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKL    450
                     ||||||:.||||:|||||||||||||||||||||||||||||||||||:|
BL00082___gyr    401 QTAEIAKNGLIEKFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVEL    450

BSNT_00008___    451 IAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDL    500
                     |||||.|||:|.||||||||||||:|||||||||||||||||||||||||
BL00082___gyr    451 IAELKAILADEEKVLEIIREELTEVKERFNDERRTEIVTSGLETIEDEDL    500

BSNT_00008___    501 IERENIVVTLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLIS    550
                     |.|||||||||||||:||||:||||||||||||:||||||||||||||||
BL00082___gyr    501 ITRENIVVTLTHNGYIKRLPSSTYRSQKRGGKGIQGMGTNEDDFVEHLIS    550

BSNT_00008___    551 TSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINA    600
                     ||||||||||||||||||||||||||:|||||||||||||||||||||||
BL00082___gyr    551 TSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVEKGEWINA    600

BSNT_00008___    601 IIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELM    650
                     ||||.||:.|.|||||||||:||||.||||||||||||||||||::|||:
BL00082___gyr    601 IIPVGEFDDESYLFFTTKHGISKRTPLSQFANIRNNGLIALSLRDEDELI    650

BSNT_00008___    651 GVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVV    700
                     .||||||.|||||||||||||||||||||:|||||||||||.||||||||
BL00082___gyr    651 AVRLTDGNKQIIIGTKNGLLIRFPETDVRQMGRTAAGVKGINLTDDDVVV    700

BSNT_00008___    701 GMEILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQL    750
                     |||||||:|||||||||||||.|||.|||.||||||||||.|||||||.|
BL00082___gyr    701 GMEILEEDSHVLIVTEKGYGKLTPASEYRVQSRGGKGLKTCKITENNGSL    750

BSNT_00008___    751 VAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHV    800
                     |.||||.|||||||||||||:|||||.|||.||||||||||||:.|:|||
BL00082___gyr    751 VTVKATTGEEDLMIITASGVIIRMDIKDISTTGRVTQGVRLIRLGEQEHV    800

BSNT_00008___    801 ATVALVEKNEEDENEEEQEEV-    821
                     ||||||||:||:::||::.:. 
BL00082___gyr    801 ATVALVEKDEENDSEEQEADES    822


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.