Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05329 and BL00084

See Amino acid alignment / Visit BSNT_05329 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:26
# Commandline: needle
#    -asequence dna-align/BSNT_05329___nagA.1.5803.seq
#    -bsequence dna-align/BL00084___nagA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05329___nagA-BL00084___nagA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05329___nagA-BL00084___nagA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05329___nagA
# 2: BL00084___nagA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1363
# Identity:     775/1363 (56.9%)
# Similarity:   775/1363 (56.9%)
# Gaps:         329/1363 (24.1%)
# Score: 1826.5
# 
#
#=======================================

BSNT_05329___      1 --------------ATGGCAGAGAGTCT-TCTTATTAAAGACAT-TGCGA     34
                                   ||..||   |..|| |.||.||||  |||| |.| |
BL00084___nag      1 GTGAAAACCAAACCATCTCA---ACGCTATATTTTTAA--ACATCTTC-A     44

BSNT_05329___     35 TCGTGACA--GAAAATGAAGTAATCAAAAACGGCTATGTCGGAATC----     78
                     |..|.|||  |||||||.|.|.||..||.||||.|.|.|     ||    
BL00084___nag     45 TATTTACAGTGAAAATGGAATGATAGAAGACGGTTTTCT-----TCTGAC     89

BSNT_05329___     79 -AATGACGGAAAAATCAGCACAGTCTCAACAGAACGGCCCAAGGAGTCAT    127
                      ||||..|.|||||||    .||.||      .||||.||||.|..|.||
BL00084___nag     90 GAATGGAGAAAAAATC----GAGGCT------TACGGACCAATGGCTGAT    129

BSNT_05329___    128 ATTCAAAAGAGATTCAAGCAC-----------CTGCGGA---TTCCG---    160
                     ||||    .||.||| .||||           |.||.||   |||||   
BL00084___nag    130 ATTC----CAGCTTC-CGCACAAACGGCAGAACAGCTGACATTTCCGGAG    174

BSNT_05329___    161 ---TT----TTGCTTCCCGGCATGATTGACATTCATATCCACGGCGGC-T    202
                        ||    .||||.||.||||||||.||..|.||.||.||||| ||| .
BL00084___nag    175 AACTTCAAAGTGCTGCCGGGCATGATCGATGTCCACATTCACGG-GGCAA    223

BSNT_05329___    203 ATGGCGCAGATACAATGGATGCTA--------GCTTTTCCACGCTCGACA    244
                     |.|||||||||...|||||.|..|        |||||.|.|      |||
BL00084___nag    224 ACGGCGCAGATGTCATGGACGGAACAGCCGAGGCTTTGCAA------ACA    267

BSNT_05329___    245 TCATGTCGTCAAG-ACTGCCCGAAGAAGGCACGACGAGCTTTTTAGCCAC    293
                       |||.| |.||| .|||||..|||||||.|||||.|||||..|.||.||
BL00084___nag    268 --ATGGC-TGAAGCCCTGCCGAAAGAAGGAACGACAAGCTTCCTGGCGAC    314

BSNT_05329___    294 AACGATTACCCAA---------------GAGCATGGGAACATTTCT--CA    326
                     .|||||.||||||               |||||||.|       ||  ||
BL00084___nag    315 GACGATGACCCAAGATAAAGCCACGATCGAGCATGCG-------CTGGCA    357

BSNT_05329___    327 AGCTTT----GGTGAACGCAAGAGAGTGGAAAGCGG--CTGAAGAGTCCT    370
                     |.|.||    |||..|.|.|||...|.|||   |||  |.|||.|     
BL00084___nag    358 AACGTTCACCGGTATAAGGAAGCCGGCGGA---CGGCCCGGAACA-----    399

BSNT_05329___    371 CTTTATTAGGTGCAGAACTGCTCGGCATTCATTTAGAGGGCCCCTTTGTT    420
                                ||.|||.|..|.|||.||||.|||||||||||.|||.||
BL00084___nag    400 -----------GCCGAAGTATTAGGCGTTCACTTAGAGGGCCCTTTTATT    438

BSNT_05329___    421 TCGCCTAAAAGAGC----CGGAGCGCAGCCAAAGGAGTG-GATTAGGCCT    465
                     ||    |.||.|||    |||.||.|||||...||| || .||||...|.
BL00084___nag    439 TC----AGAAAAGCGGTGCGGCGCCCAGCCGCCGGA-TGACATTATAGCG    483

BSNT_05329___    466 TCGGATGTTGCGCTTTTCAAAAAGTGGCAGCAGGAGGCGGGC-------G    508
                     .|||||.||.||.|.||.|||.|.|||||||         ||       |
BL00084___nag    484 CCGGATCTTTCGTTATTTAAAGAATGGCAGC---------GCATCTCAGG    524

BSNT_05329___    509 GACTGATCA--AAATT-GTTACACTTGCGCCGGA----GGAGGATCAGCA    551
                     ||.| |.||  ||||| ||.|||||||||||.||    |.|||.||    
BL00084___nag    525 GAAT-AACATTAAATTAGTCACACTTGCGCCAGAGCTGGAAGGGTC----    569

BSNT_05329___    552 TTTTGAACTGATCCGCCATTTGAAAGACGAATCGATTATCGCGTCCATGG    601
                     |||.|||||.||...|..||||||.||...|..|.|.|||||.|||    
BL00084___nag    570 TTTGGAACTAATTTCCTTTTTGAAGGAAACAGGGGTCATCGCATCC----    615

BSNT_05329___    602 GGCACACGG--ATGCCGATTCCGCATTGCTGTCGGATGCCGCAA------    643
                      |||   ||  ||.||||   |||        ||||   |.|||      
BL00084___nag    616 -GCA---GGCCATTCCGA---CGC--------CGGA---CTCAAAGAGAT    647

BSNT_05329___    644 --AAGCAGG------GGCGAG------CCATATGACTCATCTGTACAACG    679
                       ||||.||      |||..|      ||||.|.||.|||.|||.|||||
BL00084___nag    648 GGAAGCCGGGATTAAGGCCGGCCTCTCCCATGTCACCCATTTGTTCAACG    697

BSNT_05329___    680 CGATGAGCCCGTTTCATCACCGAGAGCC-CGGAGTGATCGGAACGGCGCT    728
                     ..|||.|...|.|.||.|||||.||||| .|||.|| .|||.|  |||||
BL00084___nag    698 GCATGCGGGGGCTGCACCACCGCGAGCCGGGGACTG-CCGGTA--GCGCT    744

BSNT_05329___    729 GGCC--CATGATG-------GGTTTGTGACAGAGCTTATTGCCGATGGCA    769
                     ...|  |||||||       ||       |.||..|.||||||||.||||
BL00084___nag    745 CTTCTGCATGATGAACTGAAGG-------CTGAAGTCATTGCCGACGGCA    787

BSNT_05329___    770 TTCA----CTCCCATCCTTTAGCTGCAAAGCTTGCTTTTTTGGCGAAAGG    815
                     |.||    |.|||..||.|.|.|    |||||.||.|||..|  .|||..
BL00084___nag    788 TCCATGTTCACCCTGCCGTCATC----AAGCTGGCATTTCAG--CAAAAA    831

BSNT_05329___    816 CAGCAGCAAG--CTCATTTTAATTACCGATTCCATGAGGGCAAAAGGCCT    863
                     |||.|..|||  .|||||||||||||.|||.|||||.|.||||||.||.|
BL00084___nag    832 CAGAAAGAAGGCATCATTTTAATTACGGATGCCATGCGCGCAAAATGCTT    881

BSNT_05329___    864 GAAAGACGG--CGTATATGAGTTTGGCGGCCA--AAGTGTGACGGTAAGA    909
                     ||||.|.||  |.||||  ..||.|||||.||  |.||||  ..||||.|
BL00084___nag    882 GAAAAATGGAACCTATA--CATTAGGCGGACAGGAGGTGT--TCGTAAAA    927

BSNT_05329___    910 GGACGA-ACAGCACTTCTTTC-AGACGGAACCCTTGCCGGTTCGATCCTC    957
                     || ||| |.||| |.|.||.| .||.||.||.||||||||....|||.|.
BL00084___nag    928 GG-CGATAAAGC-CGTTTTACGGGATGGTACGCTTGCCGGCAGCATCTTG    975

BSNT_05329___    958 AAAATGAACGAAGGC-GCACGGCATATGCGTGAGTTTAC---AAATTGCT   1003
                     ||.|||||| .|||| ||||.|.|.|||...||.|||||   |..|| |.
BL00084___nag    976 AAGATGAAC-CAGGCTGCACTGAACATGATGGATTTTACGGGATGTT-CA   1023

BSNT_05329___   1004 CTTGGACGGATATAG-CTAATATAACTTCTG-CAAACGCGGCCAAACAGC   1051
                     ||.|.|  |||||.| || |.||.||..|.| |||.| |.||||.|||||
BL00084___nag   1024 CTCGAA--GATATCGTCT-ACATGACAGCAGTCAATC-CTGCCAGACAGC   1069

BSNT_05329___   1052 TGGGCATCTT--TGACCGAAAAGGCAGTGTGACTGTG-GGAAAAGATGCA   1098
                     |  .|||.||  ||||||.||||||||..| ||.|.| ||.||||||||.
BL00084___nag   1070 T--TCATATTTATGACCGGAAAGGCAGCAT-ACGGAGCGGGAAAGATGCC   1116

BSNT_05329___   1099 GATTTGGTGATTGTCA-----------GCAGTGATTGCGAGGTGATTCTC   1137
                     ||||||.|.|||.|.|           |.|||        .||||   |.
BL00084___nag   1117 GATTTGATCATTTTAAATGAAAAAAATGAAGT--------TGTGA---TG   1155

BSNT_05329___   1138 ACCATTTGCCGCGGAAA-----CATTGCATTTATATCCAA---GGAGG-C   1178
                     ||..|||||     |||     .|||||.||.|   .|||   ||||| .
BL00084___nag   1156 ACGCTTTGC-----AAAGGCGTGATTGCTTTCA---GCAAAAGGGAGGTT   1197

BSNT_05329___   1179 TGACCAGATATGA   1191
                     |.|||    ||||
BL00084___nag   1198 TCACC----ATGA   1206


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