Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05332 and BL00086

See Amino acid alignment / Visit BSNT_05332 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:26
# Commandline: needle
#    -asequence dna-align/BSNT_05332___yvoA.1.5803.seq
#    -bsequence dna-align/BL00086___yvoA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05332___yvoA-BL00086___yvoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05332___yvoA-BL00086___yvoA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05332___yvoA
# 2: BL00086___yvoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity:     461/837 (55.1%)
# Similarity:   461/837 (55.1%)
# Gaps:         210/837 (25.1%)
# Score: 1088.5
# 
#
#=======================================

BSNT_05332___      1 ATGAATATCAATAAACAATCGCCTATTCCGATTTATTATCAGATTATGGA     50
                     .||   |||||.|||.|.||.|..|||||||||||.|||||||||   ||
BL00086___yvo      1 TTG---ATCAAAAAAGATTCCCACATTCCGATTTACTATCAGATT---GA     44

BSNT_05332___     51 GCAATTAAAAACCCAAATTAAGAACGGAGAGCTGCAGCCG--------GA     92
                     |         |||.|||||||      |.||||  .||||        ||
BL00086___yvo     45 G---------ACCGAAATTAA------AAAGCT--TGCCGAAACAAAAGA     77

BSNT_05332___     93 TATG-----------CCTC-TTCCTTCCGAGCGCGAATATGCCGAACAAT    130
                     |.||           |||| |||||||.||..|.||.|..||.|||.|||
BL00086___yvo     78 TTTGAAACCCGGCGACCTCATTCCTTCTGAAAGAGAGTTCGCAGAAAAAT    127

BSNT_05332___    131 TCGGGATCAGCCGGATGACAGTTCGCCAGGCGCTTTCTAATTTAGTTAAT    180
                     ..|.|.|.|||.|||||||.|||||.||||||.||...|||.|.||.|||
BL00086___yvo    128 ATGAGGTGAGCAGGATGACCGTTCGACAGGCGGTTAACAATCTCGTCAAT    177

BSNT_05332___    181 GAAGGCTTGCTCTATCGCCTGAAAGGACGGGGCACCTTTGTCAGCAAGCC    230
                     ||||||.|.|||...||.|.|...|||...||.||.|||.|...|.||||
BL00086___yvo    178 GAAGGCATTCTCGTCCGGCAGCGGGGAAAAGGGACATTTATTGCCGAGCC    227

BSNT_05332___    231 AAAAATGGAACAAGCACTTCAAGGGCTGACAAGCTTTACCGAGGATATGA    280
                     ||||||.||.||..|.||..||||..|||||||||||.|||||||.||||
BL00086___yvo    228 AAAAATTGAGCAGCCTCTCAAAGGATTGACAAGCTTTTCCGAGGACATGA    277

BSNT_05332___    281 A---AAGCCGCGGG-ATGACACCGGGCAGCA--------GGCTCATTGAT    318
                     |   |||    ||| ||||..||.||||..|        ||||       
BL00086___yvo    278 AATCAAG----GGGCATGAGGCCCGGCACGAAAATGCTCGGCT-------    316

BSNT_05332___    319 TATCAGCTTATTGATTC------AACTGAG--GAGCTCGC-----GGCTA    355
                       ||.||   .|.||.|      |.|.|||  .|||.|||     ||..|
BL00086___yvo    317 --TCGGC---GTCATCCCGTGCGACCAGAGCACAGCGCGCAAACTGGAGA    361

BSNT_05332___    356 TA--TTAGGCTGCGGGCACCCCTCC-TCTATCCATAAAATCACTCGGGTG    402
                     ||  |.|.|    |||    |.||| |||    ||.||.|||..|||.|.
BL00086___yvo    362 TACGTGAAG----GGG----CTTCCGTCT----ATGAAGTCAAACGGATC    399

BSNT_05332___    403 CGGCTGGCAAATGATATTCCAATGGCGATTGAGTCCTCACATATT-----    447
                     ||.||.||..||||.||.||.|||||  ||..|...||.|.||||     
BL00086___yvo    400 CGCCTCGCCGATGACATCCCGATGGC--TTATGAAATCTCCTATTTGCCC    447

BSNT_05332___    448 -CCG-----TTTGA--GCTTG-CGGGTGA-AT--TGAACGAATCGCATTT    485
                      |||     .||.|  ||.|| |.|..|| ||  |||.||.|||    ||
BL00086___yvo    448 GCCGACTTCATTAACGGCCTGACCGAAGACATTATGAGCGCATC----TT    493

BSNT_05332___    486 TCAGTCGT-CGATCTATGATCATATTGAAAGGTACAACAGCATAC-----    529
                     |     || ||| |||||      |.||||           ||||     
BL00086___yvo    494 T-----GTACGA-CTATG------TCGAAA-----------ATACGCTCT    520

BSNT_05332___    530 ------CGATTTCCCGTGC----AAAACAGGAGCTTGAGCCAAGCG-CTG    568
                           ||||...|||.||    .|||||    ||.||.|| .||| .||
BL00086___yvo    521 CCCTTACGATCGACCGGGCCGCGCAAACA----CTAGAACC-GGCGATTG    565

BSNT_05332___    569 CCAC-CACGGAAGA-AGCGAACATTCTTGGTATTCAAAAGGGAGCGCCTG    616
                     ||.| || ||.||| |||||.| .|||.|..||..|..|.||.||.||.|
BL00086___yvo    566 CCTCTCA-GGCAGAGAGCGAGC-CTCTCGACATAGAGGAAGGCGCACCAG    613

BSNT_05332___    617 TCCTATTAATCAAAC----GAACAACATATCTGCAGAACGGAACTGCTTT    662
                     ||||..|.||..|||    ||.|    |||.||.|..||||.|...|.||
BL00086___yvo    614 TCCTGCTCATTGAACGCTTGAGC----TATTTGGACGACGGCAGACCGTT    659

BSNT_05332___    663 TGAGCATGCAAAATCTGTATACAGAGGCGACCGTTATACATTTGTCCACT    712
                     |||....|..|||||.||.||||||||||||||.||||.|||.|||    
BL00086___yvo    660 TGAAGTGGTCAAATCCGTTTACAGAGGCGACCGCTATAAATTCGTC----    705

BSNT_05332___    713 ATATGGATCGTCTTTCATAA-----------------    732
                       ||.|||        ||.|                 
BL00086___yvo    706 --ATTGAT--------ATGAAGAGGAAAGACCAATGA    732


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.