Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06281 and BL00104

See Amino acid alignment / Visit BSNT_06281 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:14
# Commandline: needle
#    -asequence dna-align/BSNT_06281___soj.1.5803.seq
#    -bsequence dna-align/BL00104___soj.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06281___soj-BL00104___soj.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06281___soj-BL00104___soj.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06281___soj
# 2: BL00104___soj
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 790
# Identity:     604/790 (76.5%)
# Similarity:   604/790 (76.5%)
# Gaps:          29/790 ( 3.7%)
# Score: 2372.0
# 
#
#=======================================

BSNT_06281___      1 ---------------------------GTGGGAAAAATCATAGCAATTAC     23
                                                |||||.|||||.||.||.||.||
BL00104___soj      1 TTGTTCAATGTGAAAGTAGGTGACATTGTGGGGAAAATTATTGCGATCAC     50

BSNT_06281___     24 GAACCAAAAAGGCGGGGTCGGCAAAACAACGACGTCTGTCAACCTTGGGG     73
                     .|||||||||||.||.||.||.|||||.||.||.|||||.|||||.||.|
BL00104___soj     51 AAACCAAAAAGGTGGCGTTGGTAAAACGACAACCTCTGTTAACCTGGGAG    100

BSNT_06281___     74 CATGTTTGGCTTACATAGGGAAAAGGGTTCTGCTGGTAGATATTGATCCG    123
                     |.||.||.||||||||.||||||||||||.||.|.||.||.||.||.|||
BL00104___soj    101 CTTGCTTAGCTTACATCGGGAAAAGGGTTTTGTTAGTCGACATAGACCCG    150

BSNT_06281___    124 CAGGGAAATGCGACAAGCGGATTAGGGATTGAAAAAGCCGATGTAGAGCA    173
                     ||.|||||.||.||||||||..|.||..|||||||.||.|||||.||.||
BL00104___soj    151 CAAGGAAACGCAACAAGCGGTATCGGCGTTGAAAAGGCTGATGTTGATCA    200

BSNT_06281___    174 GTGTGTGTACGATATTTTAGTAGATGATGCAGATGTAATAGATATTATTA    223
                     .||||||||||||||.||||||||||||||||||||.|.||||.|.||.|
BL00104___soj    201 ATGTGTGTACGATATATTAGTAGATGATGCAGATGTGAAAGATGTCATCA    250

BSNT_06281___    224 AAGCAACGACAGTAGAGAACTTGGATGTGATTCCTGCGACGATTCAGCTT    273
                     ||.||||..|.|||||.|||||||||||.||||||||.|||||.||||||
BL00104___soj    251 AAACAACATCCGTAGAAAACTTGGATGTCATTCCTGCAACGATCCAGCTT    300

BSNT_06281___    274 GCCGGGGCTGAGATCGAGCTGGTTCCTACAATATCAAGAGAAGTGAGATT    323
                     ||.|||||.||.||.||.||.|||||.||.||.||..|||||||..|..|
BL00104___soj    301 GCGGGGGCGGAAATTGAACTTGTTCCGACCATCTCCCGAGAAGTCCGGCT    350

BSNT_06281___    324 GAAGAGAGCGCTTGAAGCAGTAAAGCAAAATTATGATTATATTATCATTG    373
                     |||.||.||..|.|||.|.||.||.|||||.|||||||..||.||.||||
BL00104___soj    351 GAAAAGGGCTTTGGAATCGGTCAAACAAAACTATGATTTCATGATTATTG    400

BSNT_06281___    374 ATTGTCCGCCGTCATT-GGGCTTGCTGACGATTAACGCCCTTACTGCCTC    422
                     |.||.||||||||||| |||| ||||.||.||.||.||.|||||.||.||
BL00104___soj    401 ACTGCCCGCCGTCATTAGGGC-TGCTTACAATCAATGCGCTTACGGCTTC    449

BSNT_06281___    423 GGATTCCGTTGTGATTCCTGTACAGTGCGAATATTATGCCTTGGAGGGGC    472
                     .||||||||.||||||||.||.||||||||.||||||||..||||.||||
BL00104___soj    450 CGATTCCGTCGTGATTCCGGTCCAGTGCGAGTATTATGCGCTGGAAGGGC    499

BSNT_06281___    473 TCAGCCAGTTATTAAATACAGTACGTCTTGTGCAAAAGCATTTGAATACT    522
                     |.||||||.|..|.||..|.||.||.||.||||||||.|||||.|||||.
BL00104___soj    500 TGAGCCAGCTGCTCAACTCTGTCCGGCTCGTGCAAAAACATTTAAATACG    549

BSNT_06281___    523 GATTTAATGATTGAAGGTGTATTGCTGACAATGCTTGATGCCCGGACAAA    572
                     |||.|.|||||.||.||.|||||||||||||||||||||||..|.||.||
BL00104___soj    550 GATCTGATGATCGACGGCGTATTGCTGACAATGCTTGATGCAAGAACGAA    599

BSNT_06281___    573 CCTTGGCATTCAAGTGATTGAAGAGGTTAAAAAGTATTTTAGGGATAAAG    622
                     ..|.|||||.||.||.||.|||||.||.||||||||.||..|.|||||||
BL00104___soj    600 TTTAGGCATACAGGTCATCGAAGAAGTGAAAAAGTACTTCCGCGATAAAG    649

BSNT_06281___    623 TATATAAGACAGTTATTCCGCGTAATGTCCGTCTGAGTGAGGCACCGAGT    672
                     ||||.||.||.|||||.||.||.||||||||.||.|||||.||.||||||
BL00104___soj    650 TATACAAAACGGTTATCCCCCGGAATGTCCGGCTCAGTGAAGCGCCGAGT    699

BSNT_06281___    673 CACGGAAAACCCATCATTTTATACGATCCGCGGTCAAGAGGTGCGGAAGT    722
                     ||.|||||.||.|||||||||||.|||||.||.||.|||||.||||||||
BL00104___soj    700 CATGGAAAGCCGATCATTTTATATGATCCCCGTTCCAGAGGAGCGGAAGT    749

BSNT_06281___    723 ATATTTAGATTTAGCAAAGGAAGTGGCTGCGAATGGCTAA    762
                     .||||||||.|||||||||||||||||||||||||.||||
BL00104___soj    750 CTATTTAGAATTAGCAAAGGAAGTGGCTGCGAATGCCTAA    789


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