Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03933 and BL00125
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:57
# Commandline: needle
# -asequence dna-align/BSNT_03933.1.5803.seq
# -bsequence dna-align/BL00125___yrhL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03933-BL00125___yrhL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03933-BL00125___yrhL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03933
# 2: BL00125___yrhL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1969
# Identity: 830/1969 (42.2%)
# Similarity: 830/1969 (42.2%)
# Gaps: 866/1969 (44.0%)
# Score: 2488.0
#
#
#=======================================
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 1 ATGCGAGATCAGACACAACAACACCGTTACATACCGGGGTTAGACGGCCT 50
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 51 TCGGGCTTTTGCCGTTTTGGCGGTTATCGCTTACCACCTCAACATGAGCT 100
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 101 GGGCCGACGGAGGCTTCATTGGGGTTGATATCTTTTTTGTTTTATCAGGA 150
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 151 TATTTGATTACATCGATTATCCTGCCGGCGTATGGAAATGACATTTCCCT 200
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 201 CACATTCCGCGATTTTTGGGTGCGCCGGATACGGCGGCTGCTTCCAGCGG 250
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 251 CGACGCTCATGATTTTCGCAACCGTCATATGGGTCGCTTTGTTTAACAGA 300
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 301 GAGCTGATGCATACCGTACGGGGAGATGCGATCTCCTCTCTTTTGTATGT 350
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 351 CAGCAATTGGTGGTTTATCTTTCACGACCTGTCATATTTTGATAGTTTCG 400
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 401 GATCGCCGTCTCCTTTAAAAAACTTGTGGTCACTGGCGATTGAAGAACAG 450
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 451 TTTTATTTTATCTGGCCGATCATTTTGCTGTTGGGCATCTACATATTTAA 500
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 501 AAAGCGGGAGAGGTTTGCAGCGGCGGTTGTGCTGTGTGCGCTTTGTTCAG 550
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 551 CCATATGGATGAGCATCCTGTACGTCCCGGGCGGCGATCCGAGCCGTGTA 600
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 601 TATTACGGGACGGATACACGCGCTTTCGAGCTGTTGATCGGATGCGCATT 650
BSNT_03933 0 -------------------------------------------------- 0
BL00125___yrh 651 AGCCCTTGTGTGGCCGATGAAAAGGCTGTCTGGGAACAGGCTCCCCAACA 700
BSNT_03933 1 --------------TTGCACGCGACTGAATTTTCGGCATTTTGTATT--T 34
|||||||..|||||..||.|.|| |||.|...| |
BL00125___yrh 701 GCCTCAAGCATGCATTGCACGGAACTGAGCTTGCCGC-TTTCGCGCTGCT 749
BSNT_03933 35 TAGTGTTGTGTGTCTATTTCACAGATGAATACGAG-CCTTTTCTTTA-CA 82
|| ||.||||..|.|||||....|||||||.| || ||.|||||.|| ||
BL00125___yrh 750 TA-TGATGTGCATTTATTTTGTCGATGAATTC-AGCCCGTTTCTCTATCA 797
BSNT_03933 83 GAGGCGGAATGCTATTCATTAGCGTAACTGCCGCAATCCTTATTGCATGT 132
.|||||||||||..|.||.|||.|||..||.||.||..|.||||||||.
BL00125___yrh 798 -CGGCGGAATGCTTATAATCAGCATAATCGCAGCTATTTTGATTGCATGC 846
BSNT_03933 133 GTTTGCCATCCGAGCAGCTTTTTAGGCAATCTG--CTTTCATGGAGGCCG 180
||..|.||||||||||||||..|.||| |.|| |||||...||.||||
BL00125___yrh 847 GTCAGTCATCCGAGCAGCTTCCTGGGC--TTTGCCCTTTCCGTGAAGCCG 894
BSNT_03933 181 CTTCGGTGGCTTGGAGCGAGGTCTTACGGAATTTATCTTTGGCACTACCC 230
||.||.|||.|.||....|||||.|||||.|||||||||||||||||.||
BL00125___yrh 895 CTGCGCTGGATCGGGAAAAGGTCGTACGGCATTTATCTTTGGCACTATCC 944
BSNT_03933 231 TGTTATTGTGTTAAGCACGCCAGTTCAAGAAATCGGAAACCCTGTTTTTT 280
.|||||.|||.|.||||||||.|||||.||.||.|||||.||.||.|..|
BL00125___yrh 945 CGTTATCGTGCTGAGCACGCCTGTTCAGGAGATTGGAAATCCGGTGTACT 994
BSNT_03933 281 GGCATATCGTGCTAAAGGTCATTGTGACATGTATACTTGCCGAGCTTTCC 330
|||||.|.|.|.|.||||||...||.||||.|||.||.||.||.|||||.
BL00125___yrh 995 GGCATGTTGCGATGAAGGTCGCCGTTACATTTATTCTGGCGGAACTTTCG 1044
BSNT_03933 331 TATCTTTTTATTGAGAAGCCGGTACGGACACAGGGATTTAGGCCATTTTT 380
||||..|||||||||||||||.|.||.|.|.|.||.||||..||.|||.|
BL00125___yrh 1045 TATCGCTTTATTGAGAAGCCGATCCGAAAAGACGGTTTTAAACCGTTTGT 1094
BSNT_03933 381 CCGCCGTGTTTT----GATACATAGAATCAAGGAATGGAAAACGACATCT 426
|.||||.||||| |||| || ||||.|||||||||||||.|.||.
BL00125___yrh 1095 CAGCCGGGTTTTTCTGGATA---AG-ATCACGGAATGGAAAACGGCTTCC 1140
BSNT_03933 427 GTCATC--AGCAAAATGTCAATTGGTTTCATTATTTTCGCTATACTTATT 474
|| || ||||||||.|||||.||..|.||..||..|||..|.||..||
BL00125___yrh 1141 GT--TCCAAGCAAAATATCAATCGGCCTGATGTTTGCCGCGCTCCTCGTT 1188
BSNT_03933 475 TTTGCAGGCGGGCTGTCAGGGCTAGCCG--GAGAGCAAA-------AGCA 515
||||||||.||.|||||.||..|.|||| ||.|..||| ||||
BL00125___yrh 1189 TTTGCAGGGGGTCTGTCGGGATTGGCCGACGAAAAGAAACAGCCGCAGCA 1238
BSNT_03933 516 -TCCTA--CTAAATGGACCTAT-AGCTCACAAGAAACAAATG-CTGA--- 557
.|||| |.|||| |.||| || |||||||..| ||.|
BL00125___yrh 1239 GGCCTATTCAAAAT---CTTATGAG-------GAAACAAGCGCCTCAGCG 1278
BSNT_03933 558 CACCAGCCAGGCTTCTGGGGATAAA----AAGAACGCTGCAGCA-GATAA 602
.|.||||| |||| ||.||| ||||||| ||||.| |||||
BL00125___yrh 1279 GATCAGCC-GGCT------GACAAAAGTGAAGAACG--GCAGGACGATAA 1319
BSNT_03933 603 -AAAACACAATCCTGAACAAAAAACAACAGATTCCATTCAGGGTCAAAAG 651
|||.||||| .||| |.|.|.|| |.|.||.||.|||..
BL00125___yrh 1320 GAAAGCACAA-ACTG--------AGAGCGGA----AATGAGAGTAAAACC 1356
BSNT_03933 652 GAAAACAAAGATAGTGGGCAAGAGAC-TCATAAAAAGAAAGACACGCAAT 700
|.|||| |||.|.||..| ||| .|.|.||||||...|||.|
BL00125___yrh 1357 GGAAAC---------GGGGAGGAATCGTCA-GATACGAAAGATGAGCAGT 1396
BSNT_03933 701 CTCAACAGACGAAAGAACC----CGCA--GATACTGCGAAAGAGGTGTTA 744
|| .|.|| .|||||.|| |||| || .|||||.||.||.
BL00125___yrh 1397 CT--GCGGA-AAAAGAGCCGGATCGCATCGA------AAAAGAAGTATTG 1437
BSNT_03933 745 GCTATAGGAGATTCCGTCATGCTTGATATTTCTTCACACCTGCGTCAGTC 794
|||.|.||.|||||.||||||||.||.||..|||||..||||||.|.|..
BL00125___yrh 1438 GCTGTCGGGGATTCGGTCATGCTGGACATCGCTTCAAGCCTGCGCCGGAA 1487
BSNT_03933 795 ACTT-------TCACATGTGACGATTGATGGAAAGGTAGGAAGACAAATG 837
..|| ||||| ||.||.|||.||||.|||||.|||.||
BL00125___yrh 1488 GATTCCGGGAATCACA-------ATCGACGGACAGGTTGGAAGGCAAGTG 1530
BSNT_03933 838 TCTCAAGCTTTGGAA---CTCGCAAGGGA-------GTACAAGTCTTTTA 877
|| |||| || .|||..|| .|||...||.||||
BL00125___yrh 1531 -----AG----GGAAGCGCT-TCAATTGACATCAACCTACGCCTCCTTTA 1570
BSNT_03933 878 ATCAGCCGAACAAGGCTGTCATCATTGAGCTTGGAACCAATGGCTACTTT 927
||||.|||.||||.||.|||.|||||||..|.|||||.||.|||||.|||
BL00125___yrh 1571 ATCATCCGGACAAAGCCGTCGTCATTGAATTGGGAACAAACGGCTATTTT 1620
BSNT_03933 928 ACAAACAGCCAAATCGAACAAC----TGCTTCAATCTTTCTCAAAAGCCC 973
||..||.|||||.|.| || |||||.|..|||||||||||||..
BL00125___yrh 1621 ACGGACGGCCAATTGG----ACGCTTTGCTTGATGCTTTCTCAAAAGCGG 1666
BSNT_03933 974 ATATCTATCTTGTCAATACACGGGTTCCCCGCCAATGGGAAAGCAAGGTA 1023
||.|||||||.||.|||||.||.||.|||||.||||||||.||||||||.
BL00125___yrh 1667 ATGTCTATCTCGTGAATACGCGCGTCCCCCGACAATGGGAGAGCAAGGTG 1716
BSNT_03933 1024 AATGAATCTTTGCAGCAACAGGCCCAC-GCACATCAAAATGTTACGTTAG 1072
||||||||..|.|.|.|.||.||..|| || |.|||||||||.||.||.|
BL00125___yrh 1717 AATGAATCGCTTCGGAAGCATGCGGACAGC-CGTCAAAATGTGACATTGG 1765
BSNT_03933 1073 TTGACTGGCATACAGAAGCTCTTCAGCATCCGGAATATTTTACCCCTGAT 1122
|.||.|||||..|.|||||.||.||.|||||.||||||||.|||.|.||.
BL00125___yrh 1766 TCGATTGGCACGCTGAAGCACTGCAACATCCCGAATATTTCACCGCCGAC 1815
BSNT_03933 1123 GGTGTTCACTTGGTTCCTAAAGGGGCAAAAACTTTGACTGCTCTTATTGT 1172
||.||.|||.||.|.||.|||||.||..||.|.|||.|..|.|||||.||
BL00125___yrh 1816 GGCGTCCACCTGATGCCGAAAGGTGCTGAAGCCTTGGCATCGCTTATCGT 1865
BSNT_03933 1173 TCAGGCGATGAAATCGTAA 1191
..|.||||||||| |||
BL00125___yrh 1866 CAAAGCGATGAAA---TAA 1881
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