Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06221 and BL00176

See Amino acid alignment / Visit BSNT_06221 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:11
# Commandline: needle
#    -asequence dna-align/BSNT_06221___yycA.1.5803.seq
#    -bsequence dna-align/BL00176___yycA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06221___yycA-BL00176___yycA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06221___yycA-BL00176___yycA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06221___yycA
# 2: BL00176___yycA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2199
# Identity:    1516/2199 (68.9%)
# Similarity:  1516/2199 (68.9%)
# Gaps:         261/2199 (11.9%)
# Score: 5273.0
# 
#
#=======================================

BSNT_06221___      1 ------ATGAAAACCAAACGATTCGACG-CAGCCCTTATTCTTATTTTGC     43
                           ||.||||.|||||.|.|.||.| || ..||..||||.||||||.
BL00176___yyc      1 ATGAAAATAAAAAACAAACAACTTGATGTCA-TTCTGGTTCTAATTTTGT     49

BSNT_06221___     44 TGGCAGCAGCTT-TTTTGAATACGTATCACATTTGGCAGGATGATACAGC     92
                     ||||||| .||| ||.|||||||.|||.|||||||||.|||.|||.|.||
BL00176___yyc     50 TGGCAGC-TCTTATTCTGAATACATATAACATTTGGCTGGACGATGCCGC     98

BSNT_06221___     93 GAACCAGTACTATTTGGCGGCTGTAAAAAGCATGACGCAAAGCTTCCATA    142
                     .||||||||.||.|||||.||.||.|||||||||||||||||||||||.|
BL00176___yyc     99 CAACCAGTATTACTTGGCAGCAGTCAAAAGCATGACGCAAAGCTTCCACA    148

BSNT_06221___    143 ATTTCTTTTATGCGTCATTTGACCCTTCTGGATTTGTGACAGTAGATAAG    192
                     |||||||.|..||||||||.|||.||||.|||||.||..||||||||||.
BL00176___yyc    149 ATTTCTTCTTCGCGTCATTCGACTCTTCCGGATTCGTATCAGTAGATAAA    198

BSNT_06221___    193 CCTCCTGTCGTGTTATGGATTCAAACGATTTTCGCACTGATTTTCGGTGT    242
                     ||.||||||||.|||||||||||.||.||.||.||....||.|||||.||
BL00176___yyc    199 CCGCCTGTCGTTTTATGGATTCAGACTATATTTGCGAAAATCTTCGGCGT    248

BSNT_06221___    243 TCACACGTGGAGTGTCATCATTCCCCAGGCTCTTGCCGGAGTTGGATCTG    292
                     .||.|||||||||||.||..|.||.|||||.|||||.||.|..||.||..
BL00176___yyc    249 GCATACGTGGAGTGTGATTTTGCCGCAGGCGCTTGCAGGGGCGGGTTCCA    298

BSNT_06221___    293 TCTTCCTTCTCTACAGAGTGATCAAGCCGACTTTTGGAATTGGAGCGGCC    342
                     |||..||.||.|||..|.||||.|||||||..||.||||..||.||.|||
BL00176___yyc    299 TCTATCTGCTTTACGCACTGATAAAGCCGAAATTCGGAAAAGGCGCCGCC    348

BSNT_06221___    343 CGCATTTCCGCACTTGTTATGGCACTGACCCCTATCGCAGTAGCTGTCAG    392
                     ||||||||.||.||.||.|||||.|||||.||.|||||.||.||.||.||
BL00176___yyc    349 CGCATTTCAGCGCTGGTGATGGCGCTGACGCCGATCGCGGTCGCCGTAAG    398

BSNT_06221___    393 CCGGACAAACAATATTGACAGCATGCTTGTCTTTACCATATTGCTCGGTT    442
                     |||.||.||.|||||.|||||||||||.|||||.||..|..|.||.|||.
BL00176___yyc    399 CCGAACGAATAATATCGACAGCATGCTCGTCTTCACGCTCCTACTTGGTA    448

BSNT_06221___    443 CAGCTTGCCTGTTTCGGGCAGTAAAACAAGGCAAGCTGGTTTGGCTGCTG    492
                     ||...||||||.|...|||.||.||||||||||.||||.|.|||||.||.
BL00176___yyc    449 CATGGTGCCTGATGAAGGCGGTCAAACAAGGCAGGCTGATCTGGCTTCTC    498

BSNT_06221___    493 ACGGCATTTGCCCTAATTGGGCTCGCCTTTAATATGAAGATGATGCAAGC    542
                     .|.|||||.|..||.||.||.||||..||.||||||||||||.|.||.||
BL00176___yyc    499 GCTGCATTCGGTCTCATCGGCCTCGGATTCAATATGAAGATGTTTCAGGC    548

BSNT_06221___    543 GTTTATGGTATTGCCTGCATTTGTGTTATTCTACCTGGTTG-----CAT-    586
                     .||.|||||..|.||.||.||..||.|.||.||.||..|||     ||| 
BL00176___yyc    549 ATTCATGGTGCTTCCCGCGTTCTTGCTGTTTTATCTCATTGCGGCCCATG    598

BSNT_06221___    587 ---ATCGGGTTTCTCTGAAGAAAAAAATCGGGTCCCTGCTTCTGTCTCTT    633
                        ||.|         ||||||||||||||..||...|.||.|.||.|||
BL00176___yyc    599 CGAATTG---------GAAGAAAAAAATCGTTTCAGCGGTTTTATCGCTT    639

BSNT_06221___    634 GTCCTTCTGACAGGCCTTTCCCTCTCATGGGCGATTGCAGTGGATTCAGC    683
                     .|..|.||.||.|||.||||.||.||.||||||.||||.||.||      
BL00176___yyc    640 ATTGTCCTCACCGGCATTTCGCTTTCTTGGGCGCTTGCGGTCGA------    683

BSNT_06221___    684 CTCTTCCTCA------AGCCGGCCTTATGTAGGAAGCAGCCAGACCAACT    727
                     ||.|.|.|||      |||||.||.|||||.|||||||||||.|||||||
BL00176___yyc    684 CTATACATCAGCCGACAGCCGCCCGTATGTCGGAAGCAGCCAAACCAACT    733

BSNT_06221___    728 CAGTGCTAGAACTGGCCTTTGGCTACAACGGCACAGAGCGTCTGCTTGGG    777
                     |.|||||.||||||||.||.||||||||||||||.|||||.||.||.||.
BL00176___yyc    734 CTGTGCTTGAACTGGCTTTCGGCTACAACGGCACTGAGCGGCTTCTCGGC    783

BSNT_06221___    778 CAAACTACGGGCCTGGCAAAG-----GGTGATATGAATGCTGC--TGGCG    820
                     ||.||.|||     |||||.|     ||.||||||||  |.||  |||.|
BL00176___yyc    784 CAGACGACG-----GGCAACGCCCGCGGCGATATGAA--CGGCTTTGGAG    826

BSNT_06221___    821 GAGGGAAGATGCAGAATCAAGACAACATGCAAGC-GCCAAATGGCAACG-    868
                     |||                     |||||| ||| |||.||.|||||.| 
BL00176___yyc    827 GAG---------------------ACATGC-AGCAGCCGAACGGCAATGC    854

BSNT_06221___    869 ----GTTCATCTTTTTCTCAGAACGGAAATCAATCATTCGGAAACCATTC    914
                         |           |||||||||||||.|..||.|.|||         
BL00176___yyc    855 GCAAG-----------CTCAGAACGGAAACCGTTCGTCCGG---------    884

BSNT_06221___    915 ACATGCGCCTCAGCCGTCTAACGGACAAACCGGCGC--------------    950
                               |.||  ||.||.|||||||.||||||              
BL00176___yyc    885 ----------CGGC--TCCAATGGACAAAACGGCGCGATGCAGCCGCCGG    922

BSNT_06221___    951 --------------------------TCTCAATGG---------------    959
                                               ||||||.||               
BL00176___yyc    923 GTGCGGGCGGTTCGGCAGACGGCAGTTCTCAAGGGGCAAACGGCGGCAGC    972

BSNT_06221___    960 --------AGGCGGAGGCACACCTCCCACAGGTGGCAA---CGGTCCTGG    998
                             ||.|||||||..|||...|   ||.|||||   ||||||.||
BL00176___yyc    973 CAGCAGCCAGCCGGAGGCGGACCGGGC---GGAGGCAACGGCGGTCCCGG   1019

BSNT_06221___    999 A---AATGGAGGGCCTGGCGG------TGGAGGCGGAAAAAGCGTGAATA   1039
                     |   |||||.||.||.|||||      .||.||||||.|||||.||||.|
BL00176___yyc   1020 AGGCAATGGCGGCCCAGGCGGAGGTCAAGGCGGCGGACAAAGCATGAACA   1069

BSNT_06221___   1040 TGTTCGGCACCGGTGATCCTGGACCGCTTCGTCTTTTCCAATCAGCACTC   1089
                     ||||||||||||||||..|.||||||||..|.||.||||||||.||..|.
BL00176___yyc   1070 TGTTCGGCACCGGTGACGCAGGACCGCTGAGGCTCTTCCAATCGGCTTTA   1119

BSNT_06221___   1090 TCCGGCCAAATCAGCTGGATGCTTCCATTCTCATTGATCGGATTACTGGG   1139
                     ||.||||||||||||||||||||.|||||..||||..|.|||.|.||.||
BL00176___yyc   1120 TCGGGCCAAATCAGCTGGATGCTCCCATTTGCATTATTAGGACTGCTCGG   1169

BSNT_06221___   1140 CGCAATCGTCAGCTGGTACCGTGATCGCCGCGGACATGCTGCTGAAATGA   1189
                     |.|.|||.|||.|||||..||.|..|||||||.|.|.||.|..|||||||
BL00176___yyc   1170 CACGATCATCACCTGGTTTCGCGGCCGCCGCGAAAAAGCAGGCGAAATGA   1219

BSNT_06221___   1190 AAGAAACGCTATTCTGGGCGGCTTGGCTTGTTCCCGTGGCTGGTTTCTTC   1239
                     ||||||||.|.||.|||.|.||.|||||.|||||.||.||.||.||||||
BL00176___yyc   1220 AAGAAACGATCTTTTGGTCTGCATGGCTCGTTCCTGTCGCCGGGTTCTTC   1269

BSNT_06221___   1240 AGCATCGCAGGATTCTTCCACCAGTATTATTTGATTATGCTGGCACCGCC   1289
                     ||||||||.||||||||||||||.||.||.|||||||||.||||.|||||
BL00176___yyc   1270 AGCATCGCCGGATTCTTCCACCACTACTACTTGATTATGATGGCGCCGCC   1319

BSNT_06221___   1290 GATTGCCGCCCTTTCTGGTATCGGATGGTATACGATGCACCGCTTATACA   1339
                     |||.|||||.||.||.||.|||||||||||..|||||.||.||.|.||||
BL00176___yyc   1320 GATCGCCGCTCTGTCAGGAATCGGATGGTACGCGATGTACGGCCTTTACA   1369

BSNT_06221___   1340 AAAATAATAAAGACTGGTCCAGCTATCTTCTGCCGGCAGCCGTTCTGATC   1389
                     |.|||.|||||||||||.|.||||||||.|||||||||||||||||.|..
BL00176___yyc   1370 ACAATCATAAAGACTGGGCAAGCTATCTGCTGCCGGCAGCCGTTCTCACG   1419

BSNT_06221___   1390 ACAGCCGCGTTCCAGGTGTATATTCTGAGTGCTTATACAAGCCAAATCGG   1439
                     |||||.||.|||||.|||||.|||.|.||.||||||||||.|||||||||
BL00176___yyc   1420 ACAGCAGCATTCCAAGTGTACATTTTAAGCGCTTATACAAACCAAATCGG   1469

BSNT_06221___   1440 CAGTGTATGGATGTATGTCCTGGGGCTCTTAGGACTGGGCATCACCCTTG   1489
                     |||.|..||||||||||||.||||..||.|.||.|||||..|||||.|.|
BL00176___yyc   1470 CAGCGCTTGGATGTATGTCATGGGAATCCTGGGGCTGGGTGTCACCATCG   1519

BSNT_06221___   1490 CACTT-CTGATGCTTAAACGCAGCCATCCGTTCAGTAAGCAGCTGACCAT   1538
                     | ||| ||.|||||.||.||..|||||||.|||.|.||||||||.|||||
BL00176___yyc   1520 C-CTTACTAATGCTGAAGCGACGCCATCCATTCGGAAAGCAGCTCACCAT   1568

BSNT_06221___   1539 CATCAGCTTGTGCGTTCTGCTTCTCACACCAGTTTACTGGTCAGCAACGC   1588
                     |||||||||||||||.||.|||.|.|||||.||.||.|||||.|||||.|
BL00176___yyc   1569 CATCAGCTTGTGCGTGCTTCTTTTGACACCGGTCTATTGGTCGGCAACAC   1618

BSNT_06221___   1589 CGCTTCTATACGGTGGCAACAGCGTCCTTCCTGAATCCGGCCCGCAGCT-   1637
                     ||.|.||.|||||.||.||||||||.|||||||||||.||.||.||||| 
BL00176___yyc   1619 CGATCCTTTACGGAGGGAACAGCGTTCTTCCTGAATCAGGGCCTCAGCTG   1668

BSNT_06221___   1638 CAAAGGCTCAGCAAACGGCG--GGAACATGTTCTCTTCAGAGGTCGACAG   1685
                     |||| |||   |.|||||.|  |||  ||||||...||.||.||.||||.
BL00176___yyc   1669 CAAA-GCT---CCAACGGAGGCGGA--ATGTTCAGCTCGGACGTGGACAC   1712

BSNT_06221___   1686 CGGGCTCCTGTCCTA--TCTGAGAAAACACAATACCGGCGAAGAATATTT   1733
                     .||.||.||..|.||  ||.|.||||  |.||||||||||||||.||..|
BL00176___yyc   1713 AGGACTGCTCACATACCTCCGGGAAA--ATAATACCGGCGAAGAGTACCT   1760

BSNT_06221___   1734 ATTTGCTACTTTGACAACCGTAACAGCTGCGCCATACATCAT------TT   1777
                     .||.||.||.||||||||.|||||.||.||..|.||.|||||      ..
BL00176___yyc   1761 TTTCGCGACATTGACAACGGTAACCGCAGCCACGTATATCATCAATGCCG   1810

BSNT_06221___   1778 ACGAAAATGAATCTGTTATGGCAATGGGCGGATTTAACGGCACGGATCCC   1827
                     |||||||      |||.|||||..|.||.||.||.||||||||.||.||.
BL00176___yyc   1811 ACGAAAA------TGTCATGGCGCTCGGAGGCTTCAACGGCACAGACCCG   1854

BSNT_06221___   1828 ATTCTGACTGT--GTCGGAACTGAAAAAACTGATCAAAGAAGGCAAAGTG   1875
                     ||.|||.|.||  ||  |||||||||||.||.||||||.||||.|.|||.
BL00176___yyc   1855 ATCCTGTCGGTCAGT--GAACTGAAAAACCTCATCAAAAAAGGAAGAGTA   1902

BSNT_06221___   1876 AAATACTTCCT--TCTGTCAGAAAACAACTCAGGCAACAGCGAACTTGTT   1923
                     |||||||||||  |..||  |||   |||||||||||||||||.||.||.
BL00176___yyc   1903 AAATACTTCCTGATTAGT--GAA---AACTCAGGCAACAGCGAGCTCGTC   1947

BSNT_06221___   1924 TCCTGGATTAAGAAAAACGGAAAAGAAATAACATCTGACGAGTACAGCGG   1973
                     ||||||||.||..|||||||||..|||||..|.||||||.|.||||||.|
BL00176___yyc   1948 TCCTGGATCAAAGAAAACGGAACCGAAATTTCGTCTGACCAATACAGCAG   1997

BSNT_06221___   1974 TTCCTCCAG-CAGC-ACGAACAGCGTGCAGGGAATGC--GAGGAGGACCT   2019
                         |.||| |||| .||.|||    ||||||  |||  ||||.||.||.
BL00176___yyc   1998 ----TACAGACAGCTTCGCACA----GCAGGG--TGCAAGAGGCGGCCCA   2037

BSNT_06221___   2020 GGCGG-AGAAAGCCAGCAAACTC---------TTTATCTCGTGGAATAA   2058
                     ||||| .||.|| |.||||||.|         ||.|.|| ||.|     
BL00176___yyc   2038 GGCGGCGGACAG-CGGCAAACGCTCTACAAGGTTGAGCT-GTAG-----   2079


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