Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03914 and BL00300

See Amino acid alignment / Visit BSNT_03914 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:55
# Commandline: needle
#    -asequence dna-align/BSNT_03914___yraB.1.5803.seq
#    -bsequence dna-align/BL00300___yraB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03914___yraB-BL00300___yraB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03914___yraB-BL00300___yraB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03914___yraB
# 2: BL00300___yraB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 512
# Identity:     248/512 (48.4%)
# Similarity:   248/512 (48.4%)
# Gaps:         205/512 (40.0%)
# Score: 532.0
# 
#
#=======================================

BSNT_03914___      1 ----------------ATGAATATTGCTCAGGTGGCAAAGCAGTTTGGCC     34
                                     |.||| .||||     ||..||||.||.||.|||
BL00300___yra      1 ATGGGGTATTCTATAAAAGAA-GTTGC-----TGAAAAAGTAGGTTTGCC     44

BSNT_03914___     35 TGACAGCCGCA-ACACTCCGATATTACGAACGTGTAGGATTAATC--CCG     81
                     | |||    || ||||||||||||||.|||...|.|||     ||  |.|
BL00300___yra     45 T-ACA----CATACACTCCGATATTATGAAAAAGAAGG-----TCTTCTG     84

BSNT_03914___     82 CCTGT-----AAA---ACGAAA----AAACAGCGGCATTCGCGACTATGA    119
                     |||.|     |||   |||.||    |||   |.|||||      |.|||
BL00300___yra     85 CCTTTTATTAAAAGAGACGCAAATGGAAA---CCGCATT------TTTGA    125

BSNT_03914___    120 TGAAGAAGA--TATCAAATGGATTGAATTCATTAAATGCATGCGAAA---    164
                     .|||.||||  |.||  ||||.|.||..|..|.|.||||.||||.||   
BL00300___yra    126 AGAAAAAGACTTGTC--ATGGTTGGAGCTTGTGATATGCTTGCGGAAAAC    173

BSNT_03914___    165 ------TGCGGGACTATCGATAGAAGCGCTAATTGAATATAC----AA--    202
                           ||||   ||.|||               |||| |||    ||  
BL00300___yra    174 TGACATTGCG---CTTTCG---------------GAAT-TACGGGAAATC    204

BSNT_03914___    203 --CATTATTTACC----GAAGGTGACCGTAC--AGTAGAAGCTCGAAAAA    244
                       ||  |||||.|    |||||.||..|.||  ..|.|||||.|.||.||
BL00300___yra    205 GTCA--ATTTAACAAAAGAAGGAGATTGGACCATCTCGAAGCGCAAACAA    252

BSNT_03914___    245 ATATCCTGGCTGACGAACGACAGCGGCTGATAGAGAAGCGGAAAGAAATT    294
                     |||  ||   |||..|||           |||.||||        |||.|
BL00300___yra    253 ATA--CT---TGAAAAAC-----------ATAAAGAA--------AAAAT    278

BSNT_03914___    295 G-ATGAAA--CAA---------------------TTAAAA---GATTAGA    317
                     | .|||||  |||                     ||||||   |||.|| 
BL00300___yra    279 GCTTGAAAAGCAAAGAGTCCTGGAACGCGCCTTTTTAAAAATCGATGAG-    327

BSNT_03914___    318 CACAAAAATTAAAGATTATGATGGGAAATTGCGCGAAAACGAGGCAAAAC    367
                         |||||.|...|.||||||||   |||           ||..|||| 
BL00300___yra    328 ----AAAATCATGTACTATGATGG---ATT-----------AGAAAAAA-    358

BSNT_03914___    368 TCAAAAGCAGGCCTAAAACG-----GAAAGTCTTCACGGATCAGTGGAGC    412
                       |.||.|||||    ||.|     |||||      |||||       |.
BL00300___yra    359 --AGAATCAGGC----AATGTCCTTGAAAG------CGGAT-------GA    389

BSNT_03914___    413 AAAG-AAGGTAG    423
                     |||| ||     
BL00300___yra    390 AAAGTAA-----    396


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.