Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04168 and BL00331

See Amino acid alignment / Visit BSNT_04168 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:14
# Commandline: needle
#    -asequence dna-align/BSNT_04168___lcfA.1.5803.seq
#    -bsequence dna-align/BL00331___lcfA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04168___lcfA-BL00331___lcfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04168___lcfA-BL00331___lcfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04168___lcfA
# 2: BL00331___lcfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1767
# Identity:    1218/1767 (68.9%)
# Similarity:  1218/1767 (68.9%)
# Gaps:         171/1767 ( 9.7%)
# Score: 3998.5
# 
#
#=======================================

BSNT_04168___      1 ATGCAGTCTCAAAAGCCGTGGCTTGCCG--AGTATCCC-AACGATATCCC     47
                     ||||.|.||.||||.||||||||  .||  |.|||||| ||| |.||.||
BL00331___lcf      1 ATGCCGACTGAAAAACCGTGGCT--GCGTCATTATCCCGAAC-AAATTCC     47

BSNT_04168___     48 GCATGAGCTTCCGTTGCCGA--ATAAAACCCTGCAATCCATCCTGACAGA     95
                     .||.|||||.|..||  .||  ||.||||.||.||.|||||||||..|.|
BL00331___lcf     48 TCACGAGCTGCAATT--TGAAGATCAAACACTCCATTCCATCCTGCAACA     95

BSNT_04168___     96 CTCCGCC--GCACGATTCCCTGATAAAACCGCAATATCGTTTTAT-GGAA    142
                     .||||||  |||  .||..|.||.|||||.||.|| ||.||||.| ||||
BL00331___lcf     96 ATCCGCCCAGCA--GTTTTCAGAAAAAACAGCGAT-TCATTTTCTAGGAA    142

BSNT_04168___    143 AAAAAC--TC--ACC------TTTCATGACATTCTGACGGATGCTCTTAA    182
                     ||||||  ||  |||      ||| |.||         |||||||.|.||
BL00331___lcf    143 AAAAACGTTCGTACCGGGAAGTTT-ACGA---------GGATGCTTTAAA    182

BSNT_04168___    183 ACTTGCAGCTT------TTTTGCAGGGCAATGGCCTGCAAAAAGGAGACA    226
                     |.|.||||.||      |.|.||..||||      |.|||||||||||||
BL00331___lcf    183 AATGGCAGATTACCTGCTGTCGCTCGGCA------TTCAAAAAGGAGACA    226

BSNT_04168___    227 GAGTGGCTGTTATGCTGCCCAATTGCCCGCAAACAGTGATTTCTTATTAT    276
                     ||||..|..|.||||||||.||.||||||||..|.||.||..|.|||||.
BL00331___lcf    227 GAGTATCGATCATGCTGCCGAACTGCCCGCAGGCGGTTATCGCGTATTAC    276

BSNT_04168___    277 GGCG-TCTTGTTTGCCGGTGGCATCGTGGTGCAGACGAATCCGCTTTATA    325
                     |||| |||| ||..||||.||||||||.||.|||||.||||||||.||||
BL00331___lcf    277 GGCGTTCTT-TTCTCCGGCGGCATCGTCGTCCAGACAAATCCGCTGTATA    325

BSNT_04168___    326 CCGAGCACGAGCTTGAATACCAGCTTAGAGATGCTCA----GGTAAGTGT    371
                     |.||....|||||||||.|.|.||||...||    ||    ||.||...|
BL00331___lcf    326 CGGAAAGGGAGCTTGAACATCTGCTTCATGA----CAGCGGGGCAACCAT    371

BSNT_04168___    372 AATCATCACCTTAGATTTGCTTTTCCCGAAGGCAATA-AAAATGAAAACG    420
                     .|||||.||..|.||..||||.|.||||..||| ||| |||||||||.||
BL00331___lcf    372 CATCATTACGCTCGACATGCTGTACCCGGCGGC-ATATAAAATGAAAGCG    420

BSNT_04168___    421 TTATCAA----TAGTCGACCAGATTTTGATAACCAGCGTAAAAGACTATT    466
                     .||.|||    |||.| ||...|||..|   ||.|||.|||||||.||..
BL00331___lcf    421 CTAACAAGCATTAGGC-ACATCATTGCG---ACAAGCATAAAAGATTACC    466

BSNT_04168___    467 TGCCTTTTCCGAAGAATATTCTTTACCCGCTGACG--CAAAAACAAAAAG    514
                     |||||||.||.||.|||.|.||.||||||.|  ||  ||||   ||||||
BL00331___lcf    467 TGCCTTTCCCTAAAAATCTGCTGTACCCGAT--CGTTCAAA---AAAAAG    511

BSNT_04168___    515 TG---CATATCGACTTTGA---CAAAACAGCTAACATT-------CACAC    551
                     .|   ||.||...|.||||   |||      |.|.|.|       |.|||
BL00331___lcf    512 AGAATCAAATGTCCGTTGAGATCAA------TGAAAATGAGACGACCCAC    555

BSNT_04168___    552 GTTCGCTTC--CAGTATGAAGCAGGAAA-----------AAACTGAACTC    588
                     .||   |||  ||..||    ||.||||           ||.|.||.|.|
BL00331___lcf    556 CTT---TTCCGCACCAT----CATGAAACGCCCCGTTCCAAGCGGACCGC    598

BSNT_04168___    589 CTGACAATCCCGAAGATCGATCCTGAGCATGATATCGCTGTCCTCCAGTA    638
                     |.|..|.|   ||| ||.|||||.|..||.||.||.||.|||||.|||||
BL00331___lcf    599 CCGGTATT---GAA-ATTGATCCGGCCCACGACATTGCCGTCCTGCAGTA    644

BSNT_04168___    639 TACCGGAGGAACAACCGGAGCTCCAAAAGGGGTCATGCTCACGCACCAAA    688
                     ||||||||||||.||.||..|.||||||||.||||||||||..||||..|
BL00331___lcf    645 TACCGGAGGAACGACAGGCACGCCAAAAGGCGTCATGCTCAGCCACCGCA    694

BSNT_04168___    689 ATATTTTGGCAAATACTGAAATGTGCGCCGCTTGGATGTATGACGTGAAA    738
                     |.||..|.||.||.|..||.|||||||||||.|||.|.|||.|..||||.
BL00331___lcf    695 ACATACTAGCCAACATGGAGATGTGCGCCGCCTGGTTTTATCAATTGAAT    744

BSNT_04168___    739 GAAGGCGCTGAAAAAGTGCTGGGCATCGTCCCGTTTTTTCATGTCTACGG    788
                     .||||.|..||.||.||||||||.|||||.|||||||||||.||||||||
BL00331___lcf    745 AAAGGGGAGGAGAAGGTGCTGGGGATCGTTCCGTTTTTTCACGTCTACGG    794

BSNT_04168___    789 ACTGACGGCAGTCATGAACTATTCGATTAAACTAGGCTTCGAAATGATTC    838
                     |.|||||||.|||.||||.|...||||.|..|..||.|..||||||||.|
BL00331___lcf    795 AATGACGGCCGTCTTGAATTTCACGATCAGGCAGGGGTATGAAATGATCC    844

BSNT_04168___    839 TTCTTCCTAAGTTTGATCCGCTCGAAACACTTAAAATCATCGACAAACAC    888
                     |.||.||.|..|||||..|||.||.|.|.||.||||..|||||.|||.|.
BL00331___lcf    845 TGCTGCCGAGATTTGACGCGCGCGCAGCGCTGAAAACGATCGATAAAGAA    894

BSNT_04168___    889 AAACCGACGCTCTTTCCTGGCGCACCGACAATTTACATTGGCCTTTTGCA    938
                     ||.||||||.|.|||||.||.||.|||||.|||||.||.|.|||.|||.|
BL00331___lcf    895 AAGCCGACGATATTTCCGGGGGCGCCGACGATTTATATCGCCCTGTTGAA    944

BSNT_04168___    939 TCACCCCGAATTGCAGCATTATGATCTGTCATCCATTAAAAGCTGTCTTA    988
                     .||.|||||..|.||.||.||.|||||||||||.|||||.||||||.|.|
BL00331___lcf    945 CCATCCCGACCTTCACCAATACGATCTGTCATCGATTAAGAGCTGTTTGA    994

BSNT_04168___    989 GCGGATCAGCCGCGCTCCCTGTGGAGGTAAAGCAGAAATTTGAAAAGGTG   1038
                     |||||||.||.|||||.|||||.||.||.||.|||.|.||||||||||||
BL00331___lcf    995 GCGGATCTGCGGCGCTTCCTGTTGAAGTCAAACAGCAGTTTGAAAAGGTG   1044

BSNT_04168___   1039 ACTGGCGGAAAGCTTGTGGAAGGCTATGGTTTGTCTGAGGCATCCCCAGT   1088
                     ||.|||||||.||||||.|||||.|||||..|||||||..|.||.||.||
BL00331___lcf   1045 ACGGGCGGAAGGCTTGTCGAAGGTTATGGAATGTCTGAAACGTCGCCGGT   1094

BSNT_04168___   1089 GACGCACGCCAATTTTATCTGGG----GAAAAAACAAGCCGGGCAGTATC   1134
                     .||.||||||||||||||.||||    |||.|||    .|||||||||||
BL00331___lcf   1095 CACTCACGCCAATTTTATTTGGGATTTGAATAAA----GCGGGCAGTATC   1140

BSNT_04168___   1135 GGCTGTCCTTGGCCAAGTACGGACGCTGCGATCTATTCTGAAGAGACGGG   1184
                     ||.|||||||||||..||||.||||||||.||||||||.|||||.||.||
BL00331___lcf   1141 GGGTGTCCTTGGCCTGGTACAGACGCTGCTATCTATTCGGAAGAAACCGG   1190

BSNT_04168___   1185 TGAGCTTGC-CGCTCCGTATGAGCATGGAGAAATCATTGTAAAAGGTCCG   1233
                     .| |.||.| ||..||.||||||||||||||||||..|||.|||||.|||
BL00331___lcf   1191 CG-GTTTTCTCGGGCCTTATGAGCATGGAGAAATCGCTGTCAAAGGACCG   1239

BSNT_04168___   1234 CAAGTCATGAAAGGATACTGGAATAAACCAGAGGAAACCGCCGCAGTG-C   1282
                     ||.||.||||||||.||||||||.||....||.||||||| |.|||.| |
BL00331___lcf   1240 CAGGTGATGAAAGGCTACTGGAACAATGATGAAGAAACCG-CTCAGAGTC   1288

BSNT_04168___   1283 TGAGAGATGGCTGGCTGTTCACCGGGGACATGGGCTATATGGATGAAGAA   1332
                     |.||.||.||||||.|.||.|||||.|||||.|||||.||||||.||||.
BL00331___lcf   1289 TAAGGGACGGCTGGTTTTTTACCGGAGACATCGGCTACATGGATAAAGAC   1338

BSNT_04168___   1333 GGCTTTTTCTATATTGCTGACAGGAAGAAGGATATCATCATTGCCGGCGG   1382
                     |||||.||.|||||.|..|||.|.||.||.||..|.|||||||||||.||
BL00331___lcf   1339 GGCTTCTTTTATATCGTCGACCGCAAAAAAGACGTGATCATTGCCGGGGG   1388

BSNT_04168___   1383 TTACAATATTTACCCGCGTGAGGTAGAAGAAGCGCTTTATGAACATGAAG   1432
                     .|||||.||.||||||||.||..|.|||||||.|||.||.||.|||||||
BL00331___lcf   1389 ATACAACATCTACCCGCGCGAAATCGAAGAAGTGCTCTACGAGCATGAAG   1438

BSNT_04168___   1433 CCATACAGGAAATTGTTGTTGCAGGCGTTCCCGATTCCTACAGGGGAGAA   1482
                     ||.|.|||||....||.|||||.|||.|.||.|||...||||||||.|||
BL00331___lcf   1439 CCGTTCAGGAGGCGGTCGTTGCCGGCATCCCTGATGAATACAGGGGGGAA   1488

BSNT_04168___   1483 ACAGTAAAAGCATTTGTCGT-ATTAAAGA--AAGGCGCAAAAGCCGATGC   1529
                     ||.||.||.||.|||||.|| .|.|||||  |.|...|||.|    |.|.
BL00331___lcf   1489 ACGGTTAAGGCTTTTGTTGTGCTGAAAGATCATGTTACAATA----ACGG   1534

BSNT_04168___   1530 AGAA-GAACTGGACGCTTTTGCGAGATCACGTCTAGCTCCCTATAAGGTG   1578
                     |||| |||.||||||..|.|||.|||||.|||||.|||||.|||||.|||
BL00331___lcf   1535 AGAAGGAATTGGACGAATATGCCAGATCGCGTCTCGCTCCTTATAAAGTG   1584

BSNT_04168___   1579 CCCAAAGCCTATGACTTCAGAAAGGAGTTGCCGAAAACGGCGGTGGGAAA   1628
                     ||.||||..||.||.|||||..|.||..|.||||||||||||||.|||||
BL00331___lcf   1585 CCAAAAGTATACGAGTTCAGGGACGAACTTCCGAAAACGGCGGTCGGAAA   1634

BSNT_04168___   1629 AATTTTAAGAAG-GCGTTTAC-TTGAAGAAGAAA----------CCGAAA   1666
                     .||||||||||| |||.|  | ||.||||.||||          |.||  
BL00331___lcf   1635 GATTTTAAGAAGAGCGCT--CGTTCAAGAGGAAAAGACCGGCGTCTGA--   1680

BSNT_04168___   1667 ATCATCATATCAAATAA   1683
                                      
BL00331___lcf   1680 -----------------   1680


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