Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04181 and BL00342

See Amino acid alignment / Visit BSNT_04181 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:16
# Commandline: needle
#    -asequence dna-align/BSNT_04181___ysgA.1.5803.seq
#    -bsequence dna-align/BL00342___ysgA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04181___ysgA-BL00342___ysgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04181___ysgA-BL00342___ysgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04181___ysgA
# 2: BL00342___ysgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 785
# Identity:     523/785 (66.6%)
# Similarity:   523/785 (66.6%)
# Gaps:          76/785 ( 9.7%)
# Score: 1605.0
# 
#
#=======================================

BSNT_04181___      1 GTGAAACAAATAGAATCGGCAAAAAACCAAAAAGTGAAGGATTGGAAAAA     50
                     .||||||.|||.|||||.||.|||||.||||||||||||||.||||||||
BL00342___ysg      1 TTGAAACGAATTGAATCAGCCAAAAATCAAAAAGTGAAGGACTGGAAAAA     50

BSNT_04181___     51 GCTTCACACAAAAAAAGAACGAACAAAAACAAATACATTTC-TGATAGAG     99
                     .|||||..||||||||||.||.||||||||.||||| |||| |.|||||.
BL00342___ysg     51 ACTTCATGCAAAAAAAGAGCGGACAAAAACGAATAC-TTTCTTAATAGAA     99

BSNT_04181___    100 GGAGAACACCTCGTTGAAGAGGCGTTGAAAAGCCCGGGCATTGTGAAAGA    149
                     ||.||.||.||||||||.||.|||.||||.|..|||||..||||||||||
BL00342___ysg    100 GGCGAGCATCTCGTTGAGGAAGCGCTGAAGACACCGGGTGTTGTGAAAGA    149

BSNT_04181___    150 AATCCTTGTAAAGGATGAAACGAGGA-TTCCTTCAGATCT------TGAG    192
                     ||||.|.||....||.|||  |.||| ||||  |.|.|.|      ||||
BL00342___ysg    150 AATCATGGTCGCAGACGAA--GCGGACTTCC--CGGCTATGATTGATGAG    195

BSNT_04181___    193 ACTGGTATCCAGTGCTATATGCTGAGTGAAGATGCGTTTTCAGCTGTGAC    242
                     .|||.|..||   |||||.|..||||.|..|||||.||||||||..|..|
BL00342___ysg    196 TCTGTTGCCC---GCTATGTTTTGAGCGCCGATGCTTTTTCAGCGATTGC    242

BSNT_04181___    243 TGAAACCGAAACGCCGCAGCAGATTGCCGCTGTGTGCCATATGCCTGAAG    292
                     .|||||.||.|||||.|||..|.|.||||||||.||||..|||||.|   
BL00342___ysg    243 CGAAACGGAGACGCCTCAGGCGGTCGCCGCTGTATGCCGAATGCCCG---    289

BSNT_04181___    293 AAAAGCTGG-------CAACGGCACG-CAAGGTGCTGCTGATTGACGCTG    334
                      ||||| ||       |||   .||| .|||.|||||||...|||.||||
BL00342___ysg    290 -AAAGC-GGACCTTTTCAA---TACGAAAAGCTGCTGCTAGCTGATGCTG    334

BSNT_04181___    335 TTCAAGATCCGGGAAACCTTGGCACAATGATTCGAACGGCTGATGCGGCC    384
                     |.||.||.|||||.||..|.||.||.||.||.||.|||||.||.|||||.
BL00342___ysg    335 TGCAGGACCCGGGCAATTTAGGGACGATCATCCGGACGGCAGACGCGGCG    384

BSNT_04181___    385 GGTTTGGATGCGGTTGTACTCGGTGACGGCACGGCGGACGCCTT-TAACG    433
                     ||..|.|||||.|||||..||||..|.||.||.|..||| |||| .||.|
BL00342___ysg    385 GGGATCGATGCCGTTGTTATCGGACAAGGGACTGTCGAC-CCTTACAATG    433

BSNT_04181___    434 GAAAAACACTGCGATCTGCTCAAGGATCTCACTTCCATATTCCTGTTGTG    483
                     ..|||||.||..|.||.||||||||.||.||.||.||.||.||..||.| 
BL00342___ysg    434 CCAAAACGCTCAGGTCGGCTCAAGGCTCGCATTTTCACATCCCGATTTT-    482

BSNT_04181___    484 AGAAGAAACCTGCCTTCATATGTGGACGAATTGAAG-GCAGAGGGCGTAA    532
                       ||.|..|..||.||||.|..||     ||||||| ||.||.|| |.||
BL00342___ysg    483 --AAAACGCGAGCTTTCAGAGCTG-----ATTGAAGAGCTGAAGG-GAAA    524

BSNT_04181___    533 AA--------GTATACGGCACGGCGCTGCAAAACGGAGCGCCTTACCA--    572
                     ||        ||.||||||||.||||||||     |.|.|||.|.|||  
BL00342___ysg    525 AAGCGTCCCGGTTTACGGCACAGCGCTGCA-----GGGTGCCGTGCCATT    569

BSNT_04181___    573 ---------GGAGATTCCTCAGTCTGAATCCTTTGCGCTCATTG-TAGGA    612
                              ||||      |.|||..|.||.|||||||| |||| |.|||
BL00342___ysg    570 TAGAGAAGCGGAG------CCGTCGCAGTCGTTTGCGCT-ATTGATCGGA    612

BSNT_04181___    613 AATGAAGGTGCAGGGGTGGATGCTGCATTGCTGGAAAAAACGGATTTGAA    662
                     ||.|||||..|.|||||.|||.|.||..|.||.|.|.|.||.||....||
BL00342___ysg    613 AACGAAGGATCTGGGGTCGATCCGGCCCTCCTCGCACAGACCGACCAAAA    662

BSNT_04181___    663 CCTGTACGTGCCGCTTTACGGACAGGCTGAATCACTAAACGTTGCGGTTG    712
                     .||||||||.|||.|.||||||.|.||.||.||.||.||.||.||||..|
BL00342___ysg    663 TCTGTACGTTCCGATCTACGGAAAAGCGGAGTCGCTCAATGTGGCGGCCG    712

BSNT_04181___    713 CGGCTGCCATCCTCGTGTATCACTTGCGAGGATAG    747
                     |.||.||..||||..|.|||||..|.||.|||||.
BL00342___ysg    713 CAGCCGCGGTCCTTCTTTATCATCTCCGCGGATAA    747


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